Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005571.1

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Forward (+)

102629 .. 103237

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005571.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggaagtggaagtgaagctccgcctcccagacgcgtccacacaccaaaagctctccgacctcctctcacccttccacctccaaaccctaatccaagagaacatcttcttcgacggctccaactccgagctctcctccaaccgcgccgtcctccgcctgcgcttctacgacgtcgtttcccgctgcgtcctctccctcaaggccaagcccgttatctccgacggcgtcagccgcgtctcagaactcgaagaaccattcgaccccgtcctcggacgcgcgtgcgtggccgagccgtggcgcctcctgggtgtcagttcctccactctcctaaagcgcgtgagagaggagttcggggtcggagagcaagggtttgtgtgcttgggtggatttagaaatgtgaggagcgtgtacgagtggaaggggttgaagctagagttggacgagagcaacttcgatttcgggacgtgttatgagttggagtgtgagagcttgaaccctgagaaggataagaaggttctagaggggttcttggaggagaatgggataaggtacaagtactcggatgtttccaagtttggggtttttaagtccggcaagttgccggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

202

Amino Acids

22.88

Weight (kDa)

5.31

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	297
AccII	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
AciI	CCGC	5 cut(s)	22, 142, 154, 181, 232
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	3 cut(s)	171, 225, 298
AfaI	GTAC	3 cut(s)	410, 551, 557
AfiI	CCNNNNNNNGG	4 cut(s)	269, 294, 502, 576
AflIII	ACRYGT	2 cut(s)	33, 464
AgsI	TTSAA	2 cut(s)	427, 493
AjiI	CACGTC	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	5 cut(s)	19, 52, 130, 430, 489
AluI	AGCT	5 cut(s)	19, 52, 130, 430, 489
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	201, 285
ApeKI	GCWGC	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	5 cut(s)	146, 162, 278, 300, 336
AsuHPI	GGTGA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	170
BceAI	ACGGC	4 cut(s)	130, 131, 238, 277
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	431, 518
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	2 cut(s)	184, 232
BlsI	GCNGC	2 cut(s)	185, 233
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	118, 299
BmrFI	CCNGG	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	3 cut(s)	171, 225, 298
BsaJI	CCNNGG	3 cut(s)	268, 293, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 294, 502, 576
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	268, 293, 304
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	4 cut(s)	269, 294, 502, 576
BseMII	CTCAG	2 cut(s)	252, 489
BseRI	GAGGAG	5 cut(s)	53, 124, 359, 415, 548
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
BshFI	GGCC	2 cut(s)	203, 287
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	591, 602
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	269, 294, 502, 576
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	203, 287
Bsp1286I	GDGCHC	1 cut(s)	132
BspACI	CCGC	5 cut(s)	22, 142, 154, 181, 232
BspANI	GGCC	2 cut(s)	203, 287
BspCNI	CTCAG	2 cut(s)	251, 490
BspFNI	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
BspLI	GGNNCC	2 cut(s)	118, 299
BspT107I	GGYRCC	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	268, 293, 304
BssNI	GRCGYC	3 cut(s)	171, 225, 298
Bst2UI	CCWGG	1 cut(s)	305
BstACI	GRCGYC	3 cut(s)	171, 225, 298
BstC8I	GCNNGC	2 cut(s)	158, 280
BstDEI	CTNAG	2 cut(s)	238, 498
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	5 cut(s)	146, 162, 278, 300, 336
BstMAI	GTCTC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 284
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstUI	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
BstV1I	GCAGC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	203, 287
BtgI	CCRYGG	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	158, 280
CfoI	GCGC	5 cut(s)	146, 162, 278, 300, 336
CseI	GACGC	6 cut(s)	24, 41, 175, 214, 223, 282
Csp6I	GTAC	3 cut(s)	409, 550, 556
CviQI	GTAC	3 cut(s)	409, 550, 556
DdeI	CTNAG	2 cut(s)	238, 498
DinI	GGCGCC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	2 cut(s)	11, 143
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	299
EheI	GGCGCC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	241
FaiI	YATR	1 cut(s)	471
FaqI	GGGAC	1 cut(s)	475
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	184, 232
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	184, 232
FspBI	CTAG	2 cut(s)	431, 518
GlaI	GCGC	5 cut(s)	145, 161, 277, 299, 335
GluI	GCNGC	2 cut(s)	184, 232
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	203, 287
HapII	CCGG	2 cut(s)	591, 602
HgaI	GACGC	6 cut(s)	24, 41, 175, 214, 223, 282
HhaI	GCGC	5 cut(s)	146, 162, 278, 300, 336
Hin1I	GRCGYC	3 cut(s)	171, 225, 298
Hin6I	GCGC	5 cut(s)	144, 160, 276, 298, 334
HinP1I	GCGC	5 cut(s)	144, 160, 276, 298, 334
HpaII	CCGG	2 cut(s)	591, 602
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	39, 409
Hpy188I	TCNGA	7 cut(s)	58, 127, 220, 241, 272, 359, 562
Hpy188III	TCNNGA	2 cut(s)	460, 518
Hpy8I	GTNNAC	2 cut(s)	39, 409
Hpy99I	CGWCG	4 cut(s)	116, 173, 176, 224
HpyAV	CCTTC	4 cut(s)	82, 412, 496, 505
HpyCH4IV	ACGT	2 cut(s)	171, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 284
HpyF3I	CTNAG	2 cut(s)	238, 498
HpySE526I	ACGT	2 cut(s)	171, 464
Hsp92I	GRCGYC	3 cut(s)	171, 225, 298
HspAI	GCGC	5 cut(s)	144, 160, 276, 298, 334
KasI	GGCGCC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	24, 122, 402
LpnPI	CCDG	6 cut(s)	42, 170, 290, 317, 510, 604
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	431, 518
MaeII	ACGT	2 cut(s)	171, 464
MboII	GAAGA	3 cut(s)	97, 100, 260
MhlI	GDGCHC	1 cut(s)	132
MluI	ACGCGT	1 cut(s)	33
Mly113I	GGCGCC	1 cut(s)	298
MmeI	TCCRAC	7 cut(s)	81, 144, 162, 243, 337, 417, 456
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	591, 602
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	6 cut(s)	35, 144, 234, 276, 278, 336
MwoI	GCNNNNNNNGC	2 cut(s)	231, 284
NarI	GGCGCC	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	118, 299
NmeAIII	GCCGAG	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	104
PflFI	GACNNNGTC	2 cut(s)	224, 263
PkrI	GCNGC	2 cut(s)	185, 233
PluTI	GGCGCC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	118, 299
PsyI	GACNNNGTC	2 cut(s)	224, 263
RsaI	GTAC	3 cut(s)	410, 551, 557
RsaNI	GTAC	3 cut(s)	409, 550, 556
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	184, 232
ScaI	AGTACT	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	5 cut(s)	22, 142, 154, 181, 232
SspDI	GGCGCC	1 cut(s)	297
SspMI	CTAG	2 cut(s)	431, 518
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	303
TaiI	ACGT	2 cut(s)	174, 467
TaqI	TCGA	4 cut(s)	111, 246, 258, 453
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseI	GCWGC	1 cut(s)	183
Tth111I	GACNNNGTC	2 cut(s)	224, 263
XbaI	TCTAGA	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	2 cut(s)	431, 518
ZraI	GACGTC	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.