Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Forward (+)

6913422 .. 6914064

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGGTGGAAGTGAAGCTCCGCCTCTCAGACGCCTCCGCACACCAAAAGCTCACCGACCTCCTCTCCCCCTTCCACGTCCAAACCTTAATCCAAGAGAACATCTTCTTCGACGGTTCCAACGCCGAACTCTCCTCCAACCGCGCCATACTCCGCCTCCGCTTCTACGACGGCGTTTCGCCCTGCGTCCTTTCCCTCAAGGCCAAACCCGTCATCTCTGACTGTGTCAGCCGCGTCCAAGAGCTCGAAGAGCCTTTCGACCCGGTCCTCGGCCGCACCTGCGTGGCGGAGCCGTGGCGGCTCTCCGTCGTCGACTCCTCGGCGCTCTTAAAGCGCGTGAGGGAGGAATACGGGGTCCGAGAGGAAGGGCTAGGGTTTGTGTGCTTGGGTGGGTTTAGGAATGTGAGGGGTGTGTATGAGTGGAAGGGGTTGAAGATAGAGGTGGACGAGAGTAACTATGATTTCGGGACGTGTTATGAGGTGGAGTGTGAGAGCTCGAACCCTGAAAGGGATAAGAAGATTTTGGAGAAGTTGTTGGAGGAGAATGGGATTTGGTTTCAGTATTCGGAGGTTTTGAAGTTTGCAATTTTCCGGTCTGGGAAGTTGTCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

205

Amino Acids

23.26

Weight (kDa)

5.21

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	3 cut(s)	144, 234, 336
AciI	CCGC	9 cut(s)	22, 39, 142, 154, 160, 232, 274, 287, 298
AcoI	YGGCCR	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	269, 508
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	433, 577
AjiI	CACGTC	2 cut(s)	79, 471
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	19, 52, 244, 495
AluI	AGCT	4 cut(s)	19, 52, 244, 495
Alw21I	GWGCWC	2 cut(s)	246, 497
AoxI	GGCC	2 cut(s)	201, 271
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	3 cut(s)	146, 325, 336
AspS9I	GGNCC	2 cut(s)	265, 355
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	265, 355
BanII	GRGCYC	2 cut(s)	246, 497
Bbv12I	GWGCWC	2 cut(s)	246, 497
BceAI	ACGGC	2 cut(s)	187, 277
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	232, 274, 299
BlsI	GCNGC	3 cut(s)	233, 275, 300
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	265, 355
BmgBI	CACGTC	2 cut(s)	79, 471
BmgT120I	GGNCC	2 cut(s)	265, 355
BmiI	GGNNCC	3 cut(s)	118, 291, 356
BmrFI	CCNGG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	268, 293, 318
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	6 cut(s)	50, 80, 141, 171, 518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 508
BseDI	CCNNGG	3 cut(s)	268, 293, 318
BseLI	CCNNNNNNNGG	2 cut(s)	269, 508
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	4 cut(s)	53, 124, 307, 554
BseX3I	CGGCCG	1 cut(s)	271
Bsh1236I	CGCG	3 cut(s)	144, 234, 336
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	203, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	246, 497
BsiSI	CCGG	2 cut(s)	263, 592
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	2 cut(s)	269, 508
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	203, 273
Bsp1286I	GDGCHC	2 cut(s)	246, 497
BspACI	CCGC	9 cut(s)	22, 39, 142, 154, 160, 232, 274, 287, 298
BspANI	GGCC	2 cut(s)	203, 273
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	3 cut(s)	144, 234, 336
BspLI	GGNNCC	3 cut(s)	118, 291, 356
BspMI	ACCTGC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	268, 293, 318
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	116, 224
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	293
BstFNI	CGCG	3 cut(s)	144, 234, 336
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	3 cut(s)	146, 325, 336
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	250, 279, 298, 331
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	3 cut(s)	144, 234, 336
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	203, 273
BtgI	CCRYGG	1 cut(s)	293
BtrI	CACGTC	2 cut(s)	79, 471
BveI	ACCTGC	1 cut(s)	287
CfoI	GCGC	3 cut(s)	146, 325, 336
Cfr13I	GGNCC	2 cut(s)	265, 355
CseI	GACGC	3 cut(s)	41, 175, 223
DdeI	CTNAG	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	3 cut(s)	11, 143, 302
Ecl136II	GAGCTC	2 cut(s)	244, 495
EclXI	CGGCCG	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	246, 497
Eco47I	GGWCC	2 cut(s)	265, 355
Eco52I	CGGCCG	1 cut(s)	271
Eco53kI	GAGCTC	2 cut(s)	244, 495
EcoICRI	GAGCTC	2 cut(s)	244, 495
EcoT38I	GRGCYC	2 cut(s)	246, 497
FaiI	YATR	4 cut(s)	149, 417, 459, 477
FaqI	GGGAC	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	232, 274, 299
FriOI	GRGCYC	2 cut(s)	246, 497
Fsp4HI	GCNGC	3 cut(s)	232, 274, 299
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	3 cut(s)	145, 324, 335
GluI	GCNGC	3 cut(s)	232, 274, 299
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	203, 273
HapII	CCGG	2 cut(s)	263, 592
HgaI	GACGC	3 cut(s)	41, 175, 223
HhaI	GCGC	3 cut(s)	146, 325, 336
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	3 cut(s)	144, 323, 334
HinP1I	GCGC	3 cut(s)	144, 323, 334
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	263, 592
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	313, 445
Hpy188I	TCNGA	5 cut(s)	31, 220, 359, 568, 610
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	313, 445
Hpy99I	CGWCG	4 cut(s)	116, 173, 311, 314
HpyAV	CCTTC	3 cut(s)	82, 359, 418
HpyCH4III	ACNGT	2 cut(s)	116, 224
HpyCH4IV	ACGT	2 cut(s)	78, 470
HpyCH4V	TGCA	1 cut(s)	584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	250, 279, 298, 331
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	2 cut(s)	78, 470
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	3 cut(s)	144, 323, 334
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	24, 289
LpnPI	CCDG	6 cut(s)	196, 276, 292, 516, 582, 605
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	2 cut(s)	78, 470
MaeIII	GTNAC	1 cut(s)	452
MboII	GAAGA	5 cut(s)	97, 100, 260, 445, 529
MhlI	GDGCHC	2 cut(s)	246, 497
MluCI	AATT	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	4 cut(s)	144, 162, 516, 588
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	2 cut(s)	89, 329
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	2 cut(s)	263, 592
MspR9I	CCNGG	1 cut(s)	263
MvnI	CGCG	3 cut(s)	144, 234, 336
MwoI	GCNNNNNNNGC	4 cut(s)	250, 279, 298, 331
NciI	CCSGG	1 cut(s)	263
NlaIV	GGNNCC	3 cut(s)	118, 291, 356
NmeAIII	GCCGAG	2 cut(s)	249, 299
OliI	CACNNNNGTG	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	104
PflFI	GACNNNGTC	2 cut(s)	224, 263
PkrI	GCNGC	3 cut(s)	233, 275, 300
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	2 cut(s)	246, 497
PspN4I	GGNNCC	3 cut(s)	118, 291, 356
PspPI	GGNCC	2 cut(s)	265, 355
PsyI	GACNNNGTC	2 cut(s)	224, 263
RseI	CAYNNNNRTG	1 cut(s)	281
SacI	GAGCTC	2 cut(s)	246, 497
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	89, 329
SatI	GCNGC	3 cut(s)	232, 274, 299
Sau96I	GGNCC	2 cut(s)	265, 355
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	246, 497
SinI	GGWCC	2 cut(s)	265, 355
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	585
SsiI	CCGC	9 cut(s)	22, 39, 142, 154, 160, 232, 274, 287, 298
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	2 cut(s)	246, 497
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	116, 224
TaiI	ACGT	2 cut(s)	81, 473
TaqI	TCGA	5 cut(s)	111, 246, 258, 312, 497
TasI	AATT	1 cut(s)	585
TauI	GCSGC	3 cut(s)	234, 276, 301
Tru1I	TTAA	2 cut(s)	89, 329
Tru9I	TTAA	2 cut(s)	89, 329
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	295
Tth111I	GACNNNGTC	2 cut(s)	224, 263
VpaK11BI	GGWCC	2 cut(s)	265, 355
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.