Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

7576388 .. 7577846

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACTCGACCGTCAAGATTACTTGAGACGGCGGCGCCACCACCACAACCGTCGGAGGAGATGATCGCAGCGGAATCCGACATGGTGGTGATCTTGTCGGCTCTTCTTTGCGCTCTTATCTGCGTTGCTGGTCTCGCCGCCGTCGTACGATGCGCTTGGCTCCGGCGGTTTACAGCCGGAGGAGATTCGCCGTCACCGAACAAAGGCTTGAAAAAGAAAGCTCTTCAGTCTCTTCCAAGATCCACTTTCACCGCCGCGGAATCAACCTCCGGCGCCGCCGCTGAAGAGGGAGACTCGACGGAATGTGCTATTTGCCTCACTGACTTCGCCGACGGTGAAGAAATAAGAGTGCTTCCTCTTTGTGGTCATTCTTTCCACGTGGAGTGTATTGACAAATGGCTAGTTTCTAGGTCTTCTTGTCCTTCTTGTCGCAGGATTCTTACGCCGGTGAGATGTGACCGGTGTGGTCATGCTTCTACGGCGGAGATGAAAGATCAAGCTCATCGTCATCAACATCACCAACACTCTTCTACTACCATTCCTACGTTTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

19.94

Weight (kDa)

6.69

Isoelectric Point (pI)

76.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	101 - 144	1.4e-15	Ring finger domain
zf-RING_11	PF17123	101 - 130	3e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	101 - 143	9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	101 - 145	1.5e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	102 - 141	6.3e-07	RING-type zinc-finger
zf-C3HC4	PF00097	102 - 143	6.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	112 - 144	3.9e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	2 cut(s)	34, 272
AccII	CGCG	1 cut(s)	257
AclWI	GGATC	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	209, 303
AcvI	CACGTG	1 cut(s)	379
AcyI	GRCGYC	2 cut(s)	35, 273
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	203, 362
AgeI	ACCGGT	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	2 cut(s)	221, 500
AluI	AGCT	2 cut(s)	221, 500
Alw26I	GTCTC	4 cut(s)	20, 137, 234, 285
AlwI	GGATC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	68
AsiGI	ACCGGT	1 cut(s)	459
AspLEI	GCGC	4 cut(s)	37, 113, 155, 275
AsuHPI	GGTGA	6 cut(s)	100, 186, 241, 347, 460, 509
BanI	GGYRCC	2 cut(s)	34, 272
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	80
BceAI	ACGGC	4 cut(s)	45, 125, 175, 495
BcoDI	GTCTC	4 cut(s)	20, 137, 234, 285
BfaI	CTAG	2 cut(s)	401, 408
BfoI	RGCGCY	2 cut(s)	38, 276
BisI	GCNGC	6 cut(s)	33, 69, 138, 255, 276, 279
BlsI	GCNGC	6 cut(s)	34, 70, 139, 256, 277, 280
BmiI	GGNNCC	3 cut(s)	36, 161, 274
BmsI	GCATC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	379
BsaHI	GRCGYC	2 cut(s)	35, 273
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 362
Bse118I	RCCGGY	2 cut(s)	445, 459
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	203, 362
BseRI	GAGGAG	2 cut(s)	71, 195
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	34, 272
BshTI	ACCGGT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	5 cut(s)	163, 177, 270, 446, 460
BsiWI	CGTACG	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	203, 362
BsmAI	GTCTC	4 cut(s)	20, 137, 234, 285
BsmBI	CGTCTC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	63, 90, 239, 493
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	36, 161, 274
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	2 cut(s)	108, 228
BspT107I	GGYRCC	2 cut(s)	34, 272
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	2 cut(s)	445, 459
BssAI	RCCGGY	2 cut(s)	445, 459
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	63, 90, 239, 493
BssNI	GRCGYC	2 cut(s)	35, 273
Bst4CI	ACNGT	3 cut(s)	12, 51, 335
Bst6I	CTCTTC	5 cut(s)	108, 228, 237, 279, 532
BstACI	GRCGYC	2 cut(s)	35, 273
BstBAI	YACGTR	1 cut(s)	379
BstDSI	CCRYGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	2 cut(s)	38, 276
BstHHI	GCGC	4 cut(s)	37, 113, 155, 275
BstKTI	GATC	4 cut(s)	66, 93, 242, 496
BstMAI	GTCTC	4 cut(s)	20, 137, 234, 285
BstMBI	GATC	4 cut(s)	63, 90, 239, 493
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 479
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	4 cut(s)	37, 113, 155, 275
Cfr10I	RCCGGY	2 cut(s)	445, 459
Cfr42I	CCGCGG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	459
CviAII	CATG	2 cut(s)	82, 470
CviJI	RGCY	7 cut(s)	101, 160, 176, 207, 221, 400, 500
CviKI_1	RGCY	7 cut(s)	101, 160, 176, 207, 221, 400, 500
CviQI	GTAC	1 cut(s)	146
DinI	GGCGCC	2 cut(s)	36, 274
DpnI	GATC	4 cut(s)	65, 92, 241, 495
DpnII	GATC	4 cut(s)	63, 90, 239, 493
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	5 cut(s)	108, 228, 237, 279, 532
EarI	CTCTTC	5 cut(s)	108, 228, 237, 279, 532
EciI	GGCGGA	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	209, 303
Eco72I	CACGTG	1 cut(s)	379
EgeI	GGCGCC	2 cut(s)	36, 274
EheI	GGCGCC	2 cut(s)	36, 274
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	85, 473
FaiI	YATR	2 cut(s)	83, 471
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FatI	CATG	2 cut(s)	81, 469
Fnu4HI	GCNGC	6 cut(s)	33, 69, 138, 255, 276, 279
Fsp4HI	GCNGC	6 cut(s)	33, 69, 138, 255, 276, 279
FspBI	CTAG	2 cut(s)	401, 408
GlaI	GCGC	4 cut(s)	36, 112, 154, 274
GluI	GCNGC	6 cut(s)	33, 69, 138, 255, 276, 279
HaeII	RGCGCY	2 cut(s)	38, 276
HapII	CCGG	5 cut(s)	163, 177, 270, 446, 460
HhaI	GCGC	4 cut(s)	37, 113, 155, 275
Hin1I	GRCGYC	2 cut(s)	35, 273
Hin1II	CATG	2 cut(s)	85, 473
Hin6I	GCGC	4 cut(s)	35, 111, 153, 273
HinP1I	GCGC	4 cut(s)	35, 111, 153, 273
HinfI	GANTC	6 cut(s)	4, 74, 185, 260, 293, 436
HpaII	CCGG	5 cut(s)	163, 177, 270, 446, 460
HphI	GGTGA	6 cut(s)	100, 186, 241, 347, 460, 509
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	55, 79
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	4 cut(s)	55, 146, 301, 335
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	3 cut(s)	12, 51, 335
HpyCH4IV	ACGT	2 cut(s)	378, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 479
HpySE526I	ACGT	2 cut(s)	378, 545
Hsp92I	GRCGYC	2 cut(s)	35, 273
Hsp92II	CATG	2 cut(s)	85, 473
HspAI	GCGC	4 cut(s)	35, 111, 153, 273
KasI	GGCGCC	2 cut(s)	34, 272
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	63, 90, 239, 493
LguI	GCTCTTC	2 cut(s)	108, 228
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	7 cut(s)	114, 176, 190, 283, 418, 459, 473
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	401, 408
MaeII	ACGT	2 cut(s)	378, 545
MaeIII	GTNAC	2 cut(s)	192, 455
MalI	GATC	4 cut(s)	65, 92, 241, 495
MboI	GATC	4 cut(s)	63, 90, 239, 493
MboII	GAAGA	8 cut(s)	95, 215, 224, 296, 350, 405, 519, 542
MflI	RGATCY	1 cut(s)	239
Mly113I	GGCGCC	2 cut(s)	35, 273
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	33, 102
MnlI	CCTC	6 cut(s)	49, 173, 277, 280, 326, 366
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	3 cut(s)	71, 257, 281
MspI	CCGG	5 cut(s)	163, 177, 270, 446, 460
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	134, 479
NarI	GGCGCC	2 cut(s)	35, 273
NdeII	GATC	4 cut(s)	63, 90, 239, 493
NlaIII	CATG	2 cut(s)	85, 473
NlaIV	GGNNCC	3 cut(s)	36, 161, 274
NmuCI	GTSAC	2 cut(s)	192, 455
PciSI	GCTCTTC	2 cut(s)	108, 228
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 194
PfeI	GAWTC	4 cut(s)	74, 185, 260, 436
Pfl23II	CGTACG	1 cut(s)	145
PinAI	ACCGGT	1 cut(s)	459
PkrI	GCNGC	6 cut(s)	34, 70, 139, 256, 277, 280
PleI	GAGTC	1 cut(s)	287
PluTI	GGCGCC	2 cut(s)	38, 276
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	379
PspCI	CACGTG	1 cut(s)	379
PspLI	CGTACG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	36, 161, 274
PsuI	RGATCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	86
SacII	CCGCGG	1 cut(s)	258
SapI	GCTCTTC	2 cut(s)	108, 228
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	6 cut(s)	33, 69, 138, 255, 276, 279
Sau3AI	GATC	4 cut(s)	63, 90, 239, 493
SchI	GAGTC	1 cut(s)	287
SetI	ASST	6 cut(s)	223, 269, 381, 413, 502, 548
SfaNI	GCATC	1 cut(s)	140
SfoI	GGCGCC	2 cut(s)	36, 274
Sfr303I	CCGCGG	1 cut(s)	258
SgrAI	CRCCGGYG	1 cut(s)	445
SgrBI	CCGCGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SspDI	GGCGCC	2 cut(s)	34, 272
SspMI	CTAG	2 cut(s)	401, 408
TaaI	ACNGT	3 cut(s)	12, 51, 335
TaiI	ACGT	2 cut(s)	381, 548
TaqI	TCGA	2 cut(s)	7, 296
TauI	GCSGC	5 cut(s)	35, 140, 257, 278, 281
TfiI	GAWTC	4 cut(s)	74, 185, 260, 436
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	192, 455
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	192, 455
TspDTI	ATGAA	1 cut(s)	503
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	325
XspI	CTAG	2 cut(s)	401, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.