Prupe.6G077100_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003546
Physical Location & Seq
Reverse (-)
5276914 .. 5278089
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G077100.1

Sequence Viewer

Length: 411 bp
ATGGTTAAATTTTTAGCCATCAACATATACCTGCTCATCAGAAACTTGTATGTAAATCAAAGGGCTGATCAAACTTTAACCCTCTTGGACATCGAATTCGGGGCACCAACAACGACAAATCTACGGCGAACAAGAAGACCGTCGCGGCTAATCTCTTATGGTGTACCTTTCATTCATCAAGTGGGCAAAAGAATAGGAATTTGCAGTGATGAGTGTGTTATATGCATGGAGGAGTTTAAGGAAGGAGAAAACTGCAGATTTCTTAGCAATTGTAGGCATGCATTTCACCAAAAATGCATAGATGATTGGCTTGCTACGGCTAGCAACTGTCCGGTTTGTCGAGATTGTGTTTGGGTTGTGCAAGGAGATCAAAATCAGGTTCACACAACCGTCAATATCTATTATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

137

Amino Acids

15.75

Weight (kDa)

8.09

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 145
AcsI RAATTY 3 cut(s) 8, 95, 198
AfaI GTAC 1 cut(s) 165
ApoI RAATTY 3 cut(s) 8, 95, 198
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AsuHPI GGTGA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 142
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 140, 333
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 67, 367
BspACI CCGC 1 cut(s) 145
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 257
BspMI ACCTGC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 103
BssMI GATC 2 cut(s) 67, 367
Bst4CI ACNGT 3 cut(s) 141, 329, 391
BstC8I GCNNGC 3 cut(s) 279, 312, 322
BstDEI CTNAG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 2 cut(s) 70, 370
BstMBI GATC 2 cut(s) 67, 367
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 279, 312, 322
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 226, 278
CviJI RGCY 5 cut(s) 17, 65, 148, 310, 320
CviKI_1 RGCY 5 cut(s) 17, 65, 148, 310, 320
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 69, 369
DpnII GATC 2 cut(s) 67, 367
EcoRI GAATTC 1 cut(s) 95
EcoT22I ATGCAT 3 cut(s) 227, 283, 299
FaeI CATG 2 cut(s) 229, 281
FatI CATG 2 cut(s) 225, 277
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 146
HapII CCGG 1 cut(s) 332
Hin1II CATG 2 cut(s) 229, 281
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 164, 382
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 164, 382
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 3 cut(s) 141, 329, 391
HpyCH4V TGCA 6 cut(s) 204, 225, 255, 281, 297, 361
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 2 cut(s) 229, 281
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 2 cut(s) 67, 367
LpnPI CCDG 3 cut(s) 44, 345, 362
MaeI CTAG 1 cut(s) 321
MalI GATC 2 cut(s) 69, 369
MboI GATC 2 cut(s) 67, 367
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 4 cut(s) 8, 95, 198, 268
MnlI CCTC 2 cut(s) 92, 223
Mph1103I ATGCAT 3 cut(s) 227, 283, 299
MseI TTAA 3 cut(s) 6, 77, 237
MspI CCGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 268
MvnI CGCG 1 cut(s) 145
NdeII GATC 2 cut(s) 67, 367
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 2 cut(s) 229, 281
NlaIV GGNNCC 1 cut(s) 105
NsiI ATGCAT 3 cut(s) 227, 283, 299
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 105
PstI CTGCAG 1 cut(s) 257
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 6, 77, 237
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 67, 367
SduI GDGCHC 1 cut(s) 106
SetI ASST 3 cut(s) 33, 169, 381
SfcI CTRYAG 1 cut(s) 253
SphI GCATGC 1 cut(s) 281
Sse9I AATT 4 cut(s) 8, 95, 198, 268
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 321
TaaI ACNGT 3 cut(s) 141, 329, 391
TaqI TCGA 2 cut(s) 93, 340
TasI AATT 4 cut(s) 8, 95, 198, 268
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 6, 77, 237
Tru9I TTAA 3 cut(s) 6, 77, 237
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 160, 164
TspRI CASTG 1 cut(s) 211
XapI RAATTY 3 cut(s) 8, 95, 198
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 3 cut(s) 227, 283, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.