Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

57579862 .. 57580387

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGATTGTTATCTCTGTGATTCTACTGTTTGTGGGGATTGCTGTTTTGGTGGTCATTCATATTTGTATAGTTGGGAGAACATTCAATGGAGGCAGTAACATTCAAGGTGTTGGTATGGTGGTTCAAAGAAGAAGCATTGGGATGAAAAGGATGTCCATTGAGGAGTTGAATATGCTTCCTTGCTTTGATTACATGGCAGGAGAGAAAGGGAGTACTGCTAGCCCTGTGGAATGTGCAGTTTGTTTGGAAAATATCAAGACGGGCGAAAAGTGCAGGTTGTTGCCAAATTGCGGTCACAGCTTCCATGCTCAATGCATAGACTCCTGGTTGTTGAAGACACCCGTTTGTCCAGTATGCAGGAGTTGTGTCAATCGTCCAAAGATTGATGTGAGTGTCGGTGAGGAAGCTAGTGTTGCAGGTGAGCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

15.57

Weight (kDa)

7.51

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	78 - 121	6.7e-14	Ring finger domain
zf-RING_11	PF17123	78 - 107	6e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	78 - 120	6.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	79 - 120	8.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	79 - 118	2.9e-06	RING-type zinc-finger
zf-rbx1	PF12678	81 - 121	1.5e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	2 cut(s)	267, 410
AciI	CCGC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	88, 107, 128, 172, 337
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	303, 410
AluI	AGCT	2 cut(s)	303, 410
AsuHPI	GGTGA	2 cut(s)	413, 434
AsuNHI	GCTAGC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	328
BfaI	CTAG	2 cut(s)	222, 411
BfuAI	ACCTGC	2 cut(s)	267, 410
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BmtI	GCTAGC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	150, 159
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	179
BsgI	GTGCAG	2 cut(s)	258, 295
BslI	CCNNNNNNNGG	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	428
BspACI	CCGC	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	267, 410
BspOI	GCTAGC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	150, 159
BstKTI	GATC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 300, 416
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	150, 159
BveI	ACCTGC	2 cut(s)	267, 410
Cac8I	GCNNGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	196, 308
CviJI	RGCY	3 cut(s)	225, 303, 410
CviKI_1	RGCY	3 cut(s)	225, 303, 410
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	320
FaeI	CATG	2 cut(s)	199, 311
FaiI	YATR	8 cut(s)	63, 71, 119, 176, 197, 309, 320, 358
FatI	CATG	2 cut(s)	195, 307
FokI	GGATG	2 cut(s)	157, 166
FspBI	CTAG	2 cut(s)	222, 411
Hin1II	CATG	2 cut(s)	199, 311
HinfI	GANTC	2 cut(s)	22, 323
HphI	GGTGA	2 cut(s)	413, 434
Hpy188III	TCNNGA	2 cut(s)	259, 432
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	239, 276, 318, 360, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 300, 416
Hsp92II	CATG	2 cut(s)	199, 311
Kzo9I	GATC	1 cut(s)	428
LpnPI	CCDG	8 cut(s)	186, 240, 262, 313, 340, 346, 366, 405
MaeI	CTAG	2 cut(s)	222, 411
MaeIII	GTNAC	2 cut(s)	98, 296
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	2 cut(s)	144, 349
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	86, 157, 397
Mph1103I	ATGCAT	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	273, 300, 416
NdeII	GATC	1 cut(s)	428
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	199, 311
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	5 cut(s)	112, 281, 305, 412, 424
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	2 cut(s)	222, 411
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	1 cut(s)	289
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	50, 161
XspI	CTAG	2 cut(s)	222, 411
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.