Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

13273404 .. 13274039

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCGGAATCCCAAAGCATCTCAAGCATCAATAAGCAAATAGTGATCACCATCATCAACATGGTTCCTTCTCTACCTCTAGTTCCTCCCCTTCTTTCTGCCTCTGCCACTGTGGTTCTCATATCCATTTGTATCATATCATTTTCAATGCTTTCATTGGTCGCCATTACCATGTTTTACATGATTTGGGACTACTTCCGAGAGAATCATCAAAGCCGTCAAAGCGATATCGAATCAGGAGAAGAAGCAAGATTGGATCAACCAGATATTACTTATGATAACTTGGAATGGCATGAACAGTTTGCATTTTATCAAGCGGCTGTGCTGCACAATATGCGAGTGCTGGAGATTTTAGATAGAGTTATTGAGGAATTGGAAGAAAGGAAAGAACTGAGGAAACGACGAGAGCAAAAACGAGCCTTGGAAAAGAAACTGCCACAAAGTGTTAGTTGTGGAAGCCAAGAAAGTGAAATAAATTGCAAAGATTGTGCCATCTGCTGGGACGAGTTTGAGACTGGGGAGATGTGTCAAGTTCTTCCATCATGTAACCATGTTTTTCATTACAAATGCATAAACCATTGGTTCATGGAAAATCTAACTTGCCCTATTTGCCGAAAACGTGTAATAGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

212

Amino Acids

24.64

Weight (kDa)

5.2

Isoelectric Point (pI)

76.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	162 - 205	3.6e-14	Ring finger domain
zf-RING_11	PF17123	162 - 191	1.3e-11	RING-like zinc finger
zf-rbx1	PF12678	162 - 205	1.6e-06	RING-H2 zinc finger domain
zf-RING_5	PF14634	162 - 206	5.4e-06	zinc-RING finger domain
zf-C3HC4_2	PF13923	163 - 204	2.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	163 - 202	3.5e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	498
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	59, 500, 547
BceAI	ACGGC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	318, 326
BlsI	GCNGC	2 cut(s)	319, 327
BmiI	GGNNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	27, 36
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	420
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	312
BseYI	CCCAGC	1 cut(s)	498
BsgI	GTGCAG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	203, 515
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	203, 515
Bsp143I	GATC	2 cut(s)	45, 256
BspACI	CCGC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	2 cut(s)	45, 256
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	112, 300
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	392
BstKTI	GATC	2 cut(s)	48, 259
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	45, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 222, 334, 609
BstV1I	GCAGC	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	108
CviAII	CATG	7 cut(s)	61, 172, 181, 293, 543, 551, 586
CviJI	RGCY	4 cut(s)	216, 320, 419, 459
CviKI_1	RGCY	4 cut(s)	216, 320, 419, 459
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	2 cut(s)	47, 258
DpnII	GATC	2 cut(s)	45, 256
DraIII	CACNNNGTG	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	7 cut(s)	64, 175, 184, 296, 546, 554, 589
FaqI	GGGAC	2 cut(s)	203, 515
FatI	CATG	7 cut(s)	60, 171, 180, 292, 542, 550, 585
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	318, 326
Fsp4HI	GCNGC	2 cut(s)	318, 326
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	318, 326
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	365
Hin1II	CATG	7 cut(s)	64, 175, 184, 296, 546, 554, 589
HinfI	GANTC	3 cut(s)	8, 205, 233
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	7, 200
Hpy188III	TCNNGA	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	2 cut(s)	78, 101
HpyCH4III	ACNGT	2 cut(s)	112, 300
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	4 cut(s)	305, 328, 480, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 222, 334, 609
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	7 cut(s)	64, 175, 184, 296, 546, 554, 589
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	45, 256
LpnPI	CCDG	5 cut(s)	222, 276, 329, 484, 501
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	2 cut(s)	27, 36
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	2 cut(s)	47, 258
MboI	GATC	2 cut(s)	45, 256
MboII	GAAGA	3 cut(s)	254, 389, 527
MluCI	AATT	3 cut(s)	371, 475, 629
MnlI	CCTC	5 cut(s)	87, 96, 112, 361, 387
Mph1103I	ATGCAT	1 cut(s)	572
MslI	CAYNNNNRTG	2 cut(s)	59, 170
MwoI	GCNNNNNNNGC	4 cut(s)	24, 222, 334, 609
NdeII	GATC	2 cut(s)	45, 256
NlaIII	CATG	7 cut(s)	64, 175, 184, 296, 546, 554, 589
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	8, 205, 233
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	319, 327
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	59, 170
SatI	GCNGC	2 cut(s)	318, 326
Sau3AI	GATC	2 cut(s)	45, 256
SetI	ASST	2 cut(s)	79, 622
SfaNI	GCATC	2 cut(s)	27, 36
SmiMI	CAYNNNNRTG	2 cut(s)	59, 170
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	3 cut(s)	371, 475, 629
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	112, 300
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	371, 475, 629
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	8, 205, 233
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	144, 309, 548, 574
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.