Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

973734 .. 974289

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0012200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTCAACTTACCTTTCAAGGTGCCAAGATGGGTGTCTGTTATGCATGGTATGGTGGCAAACAATTTACCACCCCCACGAGAAGTAATATCTCTTTACAACCAACATAACATCGAAAGGATACGGCTATATGGTCCTGACCATGACGCCCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGGTGTAGAAAACGAACGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

70

Amino Acids

8.11

Weight (kDa)

6.25

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	13 - 69	3.1e-13	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	7, 19
AluBI	AGCT	2 cut(s)	158, 181
AluI	AGCT	2 cut(s)	158, 181
Alw21I	GWGCWC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	24, 169
BsaHI	GRCGYC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	24, 169
BspT107I	GGYRCC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	155
CviAII	CATG	3 cut(s)	47, 143, 184
CviJI	RGCY	4 cut(s)	127, 158, 168, 181
CviKI_1	RGCY	4 cut(s)	127, 158, 168, 181
DdeI	CTNAG	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	50, 146, 187
FaiI	YATR	8 cut(s)	44, 48, 53, 108, 130, 132, 144, 185
FatI	CATG	3 cut(s)	46, 142, 183
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	50, 146, 187
Hpy188III	TCNNGA	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	50, 146, 187
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	1 cut(s)	150
MaeI	CTAG	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	158, 161
Mph1103I	ATGCAT	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	50, 146, 187
NlaIV	GGNNCC	2 cut(s)	24, 169
NsiI	ATGCAT	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	24, 169
PspPI	GGNCC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	4 cut(s)	16, 24, 160, 183
SinI	GGWCC	1 cut(s)	134
Sse9I	AATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	211
SstI	GAGCTC	1 cut(s)	183
TaqI	TCGA	2 cut(s)	114, 153
TasI	AATT	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	134
XspI	CTAG	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.