Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

35513483 .. 35514079

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1244300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAACATGTTTGAAGCCCTTAAGCTTGTCATCCCACCTCCTGTTTTTTCTCTTCTTTCTTTCTTCAGCACGATAATTTTCGTATACGTCTGCATCATAGCATTCTCCATCATACTTACGTTGATTGTCATCGCCCTCTTTTATGTCATCTGCGAGTTCTTCCGGACGCCCCCTTACGAGAGGAGTAGTAACCCTGATACTGAAGCCGGGGATCAACAACTAGTGTTTCGACCAGACAACGGTTCAGAATGGAATGACCAAGCTACATTTTATCAAGCAACCCTCCTGCATAATTTCAGGATTTTGGAAATTTTGGACTCGATTGTTGAGGTTTTGGAGGAGAGAAGAGACGAGAGGCAGCAGCGAGAAAGGGAACAAGTTATGGAGAGCAAAATGCCACCAGCTATAGCTTATGGAAGCCAAGAAATTAAAATTAACTGTAAAGATTGTGTTATTTGCATGGAGGATTTTGAGACCGATCAATTGTGTCAAGTTTTTCCCTCATGCAATCATACGTTCCATTCCAACTGCATGAACACTTGGTTGAAGAAGAGCCTAACTTGCCCGATTTGTCGTAATTGTGTGTTGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

199

Amino Acids

23.03

Weight (kDa)

4.74

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	147 - 192	1.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	149 - 192	4.3e-13	Ring finger domain
zf-RING_11	PF17123	149 - 177	7.4e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	150 - 191	1.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	162
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	49, 222
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	14, 547
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	4 cut(s)	25, 263, 404, 410
AluI	AGCT	4 cut(s)	25, 263, 404, 410
Alw26I	GTCTC	2 cut(s)	342, 467
AlwI	GGATC	1 cut(s)	219
Aor13HI	TCCGGA	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	358, 361
ApoI	RAATTY	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	370, 373
BccI	CCATC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	342, 467
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	359, 362
BlsI	GCNGC	2 cut(s)	360, 363
Bme1390I	CCNGG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	196, 353
BseXI	GCAGC	2 cut(s)	370, 373
BsiSI	CCGG	2 cut(s)	163, 207
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	342, 467
BsmBI	CGTCTC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	467
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	211, 478
BspEI	TCCGGA	1 cut(s)	162
BspPI	GGATC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	211, 478
BssNAI	GTATAC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	167
Bst1107I	GTATAC	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	242, 440
Bst6I	CTCTTC	3 cut(s)	57, 340, 545
BstACI	GRCGYC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	214, 481
BstMAI	GTCTC	2 cut(s)	342, 467
BstMBI	GATC	2 cut(s)	211, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	370, 373
BstZ17I	GTATAC	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	30
CseI	GACGC	1 cut(s)	175
CviAII	CATG	4 cut(s)	7, 460, 504, 532
CviJI	RGCY	8 cut(s)	17, 25, 206, 263, 404, 410, 420, 555
CviKI_1	RGCY	8 cut(s)	17, 25, 206, 263, 404, 410, 420, 555
DpnI	GATC	2 cut(s)	213, 480
DpnII	GATC	2 cut(s)	211, 478
Eam1104I	CTCTTC	3 cut(s)	57, 340, 545
EarI	CTCTTC	3 cut(s)	57, 340, 545
Eco31I	GGTCTC	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	49, 222
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	4 cut(s)	10, 463, 507, 535
FatI	CATG	4 cut(s)	6, 459, 503, 531
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	359, 362
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	359, 362
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	359, 362
HapII	CCGG	2 cut(s)	163, 207
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	10, 463, 507, 535
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	163, 207
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	163, 298
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	242, 440
HpyCH4IV	ACGT	3 cut(s)	87, 119, 515
HpyCH4V	TGCA	5 cut(s)	93, 289, 459, 507, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpySE526I	ACGT	3 cut(s)	87, 119, 515
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	10, 463, 507, 535
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	211, 478
LguI	GCTCTTC	1 cut(s)	545
LpnPI	CCDG	8 cut(s)	54, 176, 207, 220, 246, 283, 299, 414
Lsp1109I	GCAGC	2 cut(s)	370, 373
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	3 cut(s)	87, 119, 515
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	213, 480
MboI	GATC	2 cut(s)	211, 478
MboII	GAAGA	6 cut(s)	44, 55, 151, 357, 559, 562
MfeI	CAATTG	1 cut(s)	482
MluCI	AATT	7 cut(s)	75, 292, 309, 426, 432, 482, 577
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	549, 567
MnlI	CCTC	9 cut(s)	48, 146, 174, 293, 322, 331, 348, 457, 511
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	3 cut(s)	21, 429, 435
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	2 cut(s)	163, 207
MspR9I	CCNGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	561
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	211, 478
NlaIII	CATG	4 cut(s)	10, 463, 507, 535
NspI	RCATGY	1 cut(s)	10
PciI	ACATGT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	360, 363
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	21, 429, 435
SatI	GCNGC	2 cut(s)	359, 362
Sau3AI	GATC	2 cut(s)	211, 478
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	9 cut(s)	27, 40, 90, 122, 265, 333, 406, 412, 518
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	7 cut(s)	75, 292, 309, 426, 432, 482, 577
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	242, 440
TaiI	ACGT	3 cut(s)	90, 122, 518
TaqI	TCGA	2 cut(s)	229, 320
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	7 cut(s)	75, 292, 309, 426, 432, 482, 577
Tru1I	TTAA	3 cut(s)	21, 429, 435
Tru9I	TTAA	3 cut(s)	21, 429, 435
TseI	GCWGC	2 cut(s)	358, 361
TspDTI	ATGAA	2 cut(s)	17, 548
Vha464I	CTTAAG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.