Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

10818810 .. 10819608

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTTTAGCGGTTTTGCGGTTTGGCAACAACTTCTTAGACAAATACCAATCAAAGCATCCATCCGAGTCCCCAAAGCCTTTGCTGATCATCGTCGTCATCATGAACATGTCTCAAGCCCTTAAGATTGTCATCCCACCACCTGTTTTTTCCCTTCTGACTTTCATTGGTACCATAATTTTTGTTTATGTCTGCATCATAGCATTCTCAATCATACTTTCCCTGCTCGTCATTGCCCTCTTTTACGTCGTCTGCGAGTTTGTTTGGACACCGTTATACGAGAGAAGAAATCGGGATCCCGAGGCAGGGGACGAAAGGTTGTCGTTTCAGCCAAACCGCGAAGAATGGCACGACCAAGCTACATTTTATCAGGCAGCTGTCCTTCATAATCTTAGGGTTTTGGAAATCTTGGACTCAATTGTTGAGGTGTTGGAGGAAAGAAGGGACCAAAGGCACCAGCGGGATAGGGAACAACTGTTGGAGAACAAATTGCCACCTCCCATAGCTTATGGAAGCCATGAAATTGAAATGAATTGCAAGGATTGTGTTATTTGCATGGAGGACTTTGAGACTGACCAATTGTGCCAAGTTTTTCCCTCGTGCAACCATACTTTTCATTCCAAATGCATGAACACTTGGTTGAAGAAGAGCCTAACTTGCCCCATTTGTCGTAACAGTGTACTAGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

231

Amino Acids

26.73

Weight (kDa)

5.65

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	2 cut(s)	170, 453
AccII	CGCG	1 cut(s)	339
AciI	CCGC	4 cut(s)	11, 19, 337, 460
AclWI	GGATC	2 cut(s)	290, 303
AfaI	GTAC	2 cut(s)	172, 681
AfiI	CCNNNNNNNGG	2 cut(s)	305, 306
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	527, 643
AluBI	AGCT	3 cut(s)	359, 377, 506
AluI	AGCT	3 cut(s)	359, 377, 506
Alw26I	GTCTC	2 cut(s)	117, 563
AlwI	GGATC	2 cut(s)	290, 303
Ama87I	CYCGRG	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	170, 453
BauI	CACGAG	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	117, 563
BfaI	CTAG	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	172, 297, 446, 455
BmsI	GCATC	2 cut(s)	67, 204
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 306
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	58, 62, 132
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	305, 306
BseMI	GCAATG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	339
BshNI	GGYRCC	2 cut(s)	170, 453
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	3 cut(s)	55, 323, 458
BslI	CCNNNNNNNGG	2 cut(s)	305, 306
BsmAI	GTCTC	2 cut(s)	117, 563
BsmFI	GGGAC	3 cut(s)	55, 323, 458
BsmI	GAATGC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	87, 295
BspACI	CCGC	4 cut(s)	11, 19, 337, 460
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	172, 297, 446, 455
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	1 cut(s)	641
BspT107I	GGYRCC	2 cut(s)	170, 453
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	87, 295
BssSI	CACGAG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	598
Bst4CI	ACNGT	3 cut(s)	273, 477, 677
Bst6I	CTCTTC	1 cut(s)	641
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	37, 392
BstF5I	GGATG	3 cut(s)	58, 62, 132
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	90, 298
BstMAI	GTCTC	2 cut(s)	117, 563
BstMBI	GATC	2 cut(s)	87, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	112
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	58, 62, 132
BtsIMutI	CAGTG	1 cut(s)	682
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	171, 680
CviAII	CATG	5 cut(s)	103, 109, 518, 556, 628
CviJI	RGCY	8 cut(s)	79, 119, 331, 359, 377, 506, 516, 651
CviKI_1	RGCY	8 cut(s)	79, 119, 331, 359, 377, 506, 516, 651
CviQI	GTAC	2 cut(s)	171, 680
DdeI	CTNAG	2 cut(s)	37, 392
DpnI	GATC	2 cut(s)	89, 297
DpnII	GATC	2 cut(s)	87, 295
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	629
FaeI	CATG	5 cut(s)	106, 112, 521, 559, 631
FaqI	GGGAC	3 cut(s)	55, 323, 458
FatI	CATG	5 cut(s)	102, 108, 517, 555, 627
FauI	CCCGC	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	45, 49, 119
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	1 cut(s)	375
Hin1II	CATG	5 cut(s)	106, 112, 521, 559, 631
HinfI	GANTC	2 cut(s)	68, 413
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	67, 159
Hpy188III	TCNNGA	3 cut(s)	103, 293, 299
Hpy8I	GTNNAC	1 cut(s)	680
Hpy99I	CGWCG	2 cut(s)	98, 251
HpyAV	CCTTC	3 cut(s)	164, 392, 435
HpyCH4III	ACNGT	3 cut(s)	273, 477, 677
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	195, 537, 555, 603, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	2 cut(s)	37, 392
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	106, 112, 521, 559, 631
KpnI	GGTACC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	87, 295
LguI	GCTCTTC	1 cut(s)	641
LpnPI	CCDG	5 cut(s)	156, 236, 291, 356, 470
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	67, 204
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	2 cut(s)	89, 297
MboI	GATC	2 cut(s)	87, 295
MboII	GAAGA	4 cut(s)	297, 353, 655, 658
MfeI	CAATTG	2 cut(s)	417, 578
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	6 cut(s)	177, 417, 488, 522, 532, 578
MlyI	GAGTC	2 cut(s)	77, 407
MmeI	TCCRAC	2 cut(s)	411, 459
MnlI	CCTC	7 cut(s)	248, 295, 418, 427, 507, 553, 607
Mph1103I	ATGCAT	1 cut(s)	629
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	377, 460
MspCI	CTTAAG	1 cut(s)	122
MunI	CAATTG	2 cut(s)	417, 578
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	657
NdeII	GATC	2 cut(s)	87, 295
NlaIII	CATG	5 cut(s)	106, 112, 521, 559, 631
NlaIV	GGNNCC	4 cut(s)	172, 297, 446, 455
NsiI	ATGCAT	1 cut(s)	629
NspI	RCATGY	1 cut(s)	112
PagI	TCATGA	1 cut(s)	102
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	76, 407
PpsI	GAGTC	2 cut(s)	76, 407
PscI	ACATGT	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	172, 297, 446, 455
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	172, 681
RsaNI	GTAC	2 cut(s)	171, 680
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	87, 295
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	77, 407
SetI	ASST	8 cut(s)	145, 249, 320, 361, 379, 429, 499, 508
SfaNI	GCATC	2 cut(s)	67, 204
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	114, 122
SmoI	CTYRAG	2 cut(s)	114, 122
Sse9I	AATT	6 cut(s)	177, 417, 488, 522, 532, 578
SsiI	CCGC	4 cut(s)	11, 19, 337, 460
SspMI	CTAG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	273, 477, 677
TaiI	ACGT	1 cut(s)	249
TasI	AATT	6 cut(s)	177, 417, 488, 522, 532, 578
TatI	WGTACW	1 cut(s)	679
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	7 cut(s)	119, 154, 374, 534, 545, 605, 644
TspRI	CASTG	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	445
XceI	RCATGY	1 cut(s)	112
XspI	CTAG	1 cut(s)	683
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.