Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

27577071 .. 27577517

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1183100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATTTTAATCTCTGTGATCTTACTGTTCGTGGGGGTTGCTGTTTTAGTAGTAATTCATGTGTGTATCATTGGGAGAGCATTCAACAGAGGCAATGATCAAGGTGTTAATCGGGTTCAAAGAAACAGCATTGTTGCGATAAAAAAGATGTCCAATGAGGAACTGAACATGCTGCCTTGCTTCGACTACACGGCAGAAGAGAAAGGGACCACGACCAACCACCCTGTGGATTGTGCAGTTTGCTTGGAAAGTTTCAAGGGAGGCGAAAAATGCAGGTTGTTGCCAAATTGCAGGCACAGCTTCCATGCTCAATGCATAGACTCGTGGTTGCTGAAGACTCCGGTTTGTCCGGTGTGTCGGACTTGTGCTAGAACTCCAAAGATTGATGTGAGTTTGGGAGGGGCAAGTGGCGTTTCCGGCGATTTTCGAGTGGAAATGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

149

Amino Acids

16.22

Weight (kDa)

8.06

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	78 - 121	2.9e-13	Ring finger domain
zf-RING_11	PF17123	78 - 107	5.2e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	79 - 120	3.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	79 - 118	4.8e-06	RING-type zinc-finger
zf-C3HC4	PF00097	79 - 120	8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	82 - 121	2.4e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	88, 122, 259
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	100
BfaI	CTAG	2 cut(s)	372, 445
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	11
BsaWI	WCCGGW	2 cut(s)	343, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	344, 353, 420
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	21, 100
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	103
BssMI	GATC	2 cut(s)	21, 100
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	24, 103
BstMBI	GATC	2 cut(s)	21, 100
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 300, 420
BstNSI	RCATGY	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	3 cut(s)	62, 172, 308
CviJI	RGCY	1 cut(s)	303
CviKI_1	RGCY	1 cut(s)	303
DpnI	GATC	2 cut(s)	23, 102
DpnII	GATC	2 cut(s)	21, 100
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	320
FaeI	CATG	3 cut(s)	65, 175, 311
FaiI	YATR	4 cut(s)	63, 173, 309, 320
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	61, 171, 307
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	372, 445
GluI	GCNGC	1 cut(s)	176
HapII	CCGG	3 cut(s)	344, 353, 420
Hin1II	CATG	3 cut(s)	65, 175, 311
HinfI	GANTC	2 cut(s)	323, 340
HpaII	CCGG	3 cut(s)	344, 353, 420
Hpy188I	TCNGA	1 cut(s)	363
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	239, 276, 294, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 300, 420
Hsp92II	CATG	3 cut(s)	65, 175, 311
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	21, 100
LpnPI	CCDG	6 cut(s)	240, 262, 280, 357, 366, 433
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	372, 445
MalI	GATC	2 cut(s)	23, 102
MboI	GATC	2 cut(s)	21, 100
MboII	GAAGA	2 cut(s)	212, 349
MluCI	AATT	2 cut(s)	57, 289
MlyI	GAGTC	2 cut(s)	317, 334
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	86, 154, 257, 395
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	2 cut(s)	11, 111
MspI	CCGG	3 cut(s)	344, 353, 420
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	273, 300, 420
NdeII	GATC	2 cut(s)	21, 100
NlaIII	CATG	3 cut(s)	65, 175, 311
NlaIV	GGNNCC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	320
NspI	RCATGY	1 cut(s)	175
PctI	GAATGC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	2 cut(s)	317, 334
PpsI	GAGTC	2 cut(s)	317, 334
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	11, 111
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	2 cut(s)	21, 100
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	317, 334
SetI	ASST	4 cut(s)	109, 281, 305, 446
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	57, 289
SspMI	CTAG	2 cut(s)	372, 445
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	186, 430
TasI	AATT	2 cut(s)	57, 289
Tru1I	TTAA	2 cut(s)	11, 111
Tru9I	TTAA	2 cut(s)	11, 111
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	372, 445
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.