Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

65359412 .. 65362016

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTGAACATATTCCTTGCCTGGATTCTCGAAGCTATCCCGGAACTCGATCCTGAATCAGGAGGTATTATTTACGGAACCCTGATTAATGTTGGTTCGAGAAATCAATTTCGTCAAGCTGTACTGCGATTTCTGCAGAGATTAGGAGTCATAAAGGATGTCATACCAGAAATAGAAGCAAAACGAGGGCCACGGCTTAGGGACTTGAAGAAGTTGCCACCACTAGTGTATTATGGAAGCAATGGAATTGAATTGTCGAGTTCAAGGAGTACTACTGACTGTGCAATTTGTTTGGAGGATTTTTCAGAAGGCGAGTCATCCAATAACCGCATAAATAAGGATCACCAGCTTGAGCATAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

5.67

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	44, 348
AfaI	GTAC	2 cut(s)	123, 271
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	7, 208, 251, 264
AhlI	ACTAGT	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	35, 119, 349
AluI	AGCT	3 cut(s)	35, 119, 349
AlwI	GGATC	2 cut(s)	44, 348
AoxI	GGCC	1 cut(s)	188
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	134
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	22, 41
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	22, 41
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	163, 317
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	49, 340
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	44, 348
BsrDI	GCAATG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	49, 340
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	163, 317
BstKTI	GATC	2 cut(s)	52, 343
BstMBI	GATC	2 cut(s)	49, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	20, 39
BstSFI	CTRYAG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	163, 317
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	122, 270
CviJI	RGCY	5 cut(s)	35, 119, 190, 196, 349
CviKI_1	RGCY	5 cut(s)	35, 119, 190, 196, 349
CviQI	GTAC	2 cut(s)	122, 270
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	51, 342
DpnII	GATC	2 cut(s)	49, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	20
FaiI	YATR	7 cut(s)	11, 152, 164, 234, 332, 357, 364
FaqI	GGGAC	1 cut(s)	215
FokI	GGATG	2 cut(s)	170, 304
FspBI	CTAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	41
HinfI	GANTC	4 cut(s)	25, 56, 147, 314
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	29, 53, 60, 99
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	136, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	49, 340
LpnPI	CCDG	8 cut(s)	7, 34, 45, 54, 66, 95, 180, 359
MaeI	CTAG	1 cut(s)	224
MalI	GATC	2 cut(s)	51, 342
MboI	GATC	2 cut(s)	49, 340
MboII	GAAGA	1 cut(s)	220
MluCI	AATT	5 cut(s)	107, 246, 251, 285, 358
MlyI	GAGTC	2 cut(s)	156, 323
MnlI	CCTC	3 cut(s)	56, 179, 289
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	22, 41
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	49, 340
NlaIV	GGNNCC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	25, 56
PfoI	TCCNGGA	1 cut(s)	39
PleI	GAGTC	2 cut(s)	155, 322
PpsI	GAGTC	2 cut(s)	155, 322
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	138
RsaI	GTAC	2 cut(s)	123, 271
RsaNI	GTAC	2 cut(s)	122, 270
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	49, 340
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	2 cut(s)	156, 323
ScrFI	CCNGG	2 cut(s)	22, 41
SetI	ASST	4 cut(s)	37, 67, 121, 351
SfcI	CTRYAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	5 cut(s)	107, 246, 251, 285, 358
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	20, 39
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	4 cut(s)	30, 48, 98, 257
TasI	AATT	5 cut(s)	107, 246, 251, 285, 358
TatI	WGTACW	2 cut(s)	121, 269
TfiI	GAWTC	2 cut(s)	25, 56
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.