Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

55964872 .. 55965508

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTCATGGAGATTGTTATCTCTGTGATTCTACTGTTTGTGGGGATTGCTGTTTTGGTGGTCATTCATATTTGTATAGTTGGGAGAACATTCAATGGAGGCAGTAGCATTCAAGGTGTTGGTATGGTGGTTCAAAGAAGAAGCTTTGGGATGAAAAGGATGTCCATTGAGGAGTTGAACATGCTTCCTTGCTTTGACTACATGGCAGGAGAGAAAGGGAGTACTGCTAGCCCTGTGGAATGTGCAGTTTGTTTGGAAAATATCAAGACGGGCGAAAAGTGCAGGTTGTTGCCAAATTGCGGGCACAGCTTCCATGCTCAATGCATAGACTCGTGGTTGTTGAAGACGCCGGTTTGTCCAGTATGCCGGAGTTGTGTCAATCGTCCAAAGATTGATGTGAGTGTCGGTGAGGAAGCTAGTGTTGCAGGTGATGATCTTGATATTAGCTTTTCACCACCTGAATTCAGACAACATTCGAGGCAAAGGCTTTCTCGCTTTGCCTCTTTTCTATGTTTTGCCGAAAAGAACTCGATGCTGGTTCTTCGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

183

Amino Acids

20.19

Weight (kDa)

8.02

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	80 - 123	1e-13	Ring finger domain
zf-RING_11	PF17123	80 - 109	8.8e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	80 - 122	9.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	81 - 122	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	81 - 120	4.9e-06	RING-type zinc-finger
zf-rbx1	PF12678	83 - 123	2.6e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	2 cut(s)	273, 416
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	94, 113, 134, 178, 343
AluBI	AGCT	4 cut(s)	144, 309, 416, 447
AluI	AGCT	4 cut(s)	144, 309, 416, 447
ApoI	RAATTY	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	419, 440, 444
AsuNHI	GCTAGC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	228, 417
BfuAI	ACCTGC	2 cut(s)	273, 416
BmcAI	AGTACT	1 cut(s)	223
BmsI	GCATC	1 cut(s)	522
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	17
BseGI	GGATG	2 cut(s)	156, 165
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	264, 301
BsiSI	CCGG	2 cut(s)	350, 367
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	300
BspMI	ACCTGC	2 cut(s)	273, 416
BspOI	GCTAGC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	349
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	229, 302
BstF5I	GGATG	2 cut(s)	156, 165
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
BstNSI	RCATGY	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	156, 165
BveI	ACCTGC	2 cut(s)	273, 416
Cac8I	GCNNGC	2 cut(s)	229, 302
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	7, 181, 202, 314
CviJI	RGCY	6 cut(s)	144, 231, 309, 416, 447, 487
CviKI_1	RGCY	6 cut(s)	144, 231, 309, 416, 447, 487
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	326
FaeI	CATG	4 cut(s)	10, 184, 205, 317
FatI	CATG	4 cut(s)	6, 180, 201, 313
FauI	CCCGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	163, 172
FspBI	CTAG	2 cut(s)	228, 417
HapII	CCGG	2 cut(s)	350, 367
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	10, 184, 205, 317
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	2 cut(s)	28, 329
HpaII	CCGG	2 cut(s)	350, 367
HphI	GGTGA	3 cut(s)	419, 440, 444
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	2 cut(s)	265, 437
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	245, 282, 324, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	10, 184, 205, 317
Kzo9I	GATC	1 cut(s)	433
LpnPI	CCDG	9 cut(s)	192, 246, 268, 363, 372, 380, 411, 471, 521
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	228, 417
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	150, 355, 533
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	295, 461
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	5 cut(s)	92, 163, 403, 471, 511
Mph1103I	ATGCAT	1 cut(s)	326
MspI	CCGG	2 cut(s)	350, 367
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
NdeII	GATC	1 cut(s)	433
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	10, 184, 205, 317
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	8 cut(s)	118, 146, 287, 311, 418, 430, 449, 460
SfaNI	GCATC	1 cut(s)	522
Sse9I	AATT	2 cut(s)	295, 461
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	228, 417
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	476, 530
TasI	AATT	2 cut(s)	295, 461
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	56, 167
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	228, 417
ZrmI	AGTACT	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.