Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

20226866 .. 20227309

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGAATGGAGATTTTAATCTCTGTGATCTTACTGTTCGTGGGGATTGTTGTTTTAGTGGTAATTCATGTTTGTATTGTTGGGAGAGCATTCAACAGAGCCAATAATCAAGGTGTTAATCTGGTTCAAAGAAGCAGCATTTTTGGGATCAGAAGGATGTCCAACGAGGAACTCAACATGCTGCCTTGCTTCGACTACAAGGCAGAAGAGAAAGGGACTACAACTAGCCCTGGGGATTGTGCAGTTTGCTTGGAAAGTTTCAAGGGAGGTGAAAAATGCAGGTTGTTGCCAAATTGCAAGCACAGCTTCCATGCTCAATGCATAGATTCATGGCTGCTCAAGACTCCTGTTTGTCCGGTGTGTCGGACTTGTGCTAAAACTCCGAAGATTGATGTGAGTTTGGGAGGGGAAAGCAGCGTTTCGGGCGCAATCGAAATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

148

Amino Acids

15.98

Weight (kDa)

8.05

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	79 - 122	1.4e-13	Ring finger domain
zf-RING_11	PF17123	79 - 108	4.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	80 - 121	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	80 - 119	4.4e-06	RING-type zinc-finger
zf-C3HC4	PF00097	80 - 121	5.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	83 - 122	3.3e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	94, 128, 262
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	135, 181, 334, 414
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	281
BbvI	GCAGC	4 cut(s)	147, 168, 321, 426
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	4 cut(s)	136, 182, 335, 415
BlsI	GCNGC	4 cut(s)	137, 183, 336, 416
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	229, 230
BsaWI	WCCGGW	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	229, 230
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	147, 168, 321, 426
BsgI	GTGCAG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	27, 147
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	229, 230
BssMI	GATC	2 cut(s)	27, 147
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	2 cut(s)	30, 150
BstMBI	GATC	2 cut(s)	27, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 423
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	4 cut(s)	147, 168, 321, 426
BtsCI	GGATG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	428
CviAII	CATG	4 cut(s)	68, 178, 311, 330
CviJI	RGCY	4 cut(s)	101, 228, 306, 334
CviKI_1	RGCY	4 cut(s)	101, 228, 306, 334
DpnI	GATC	2 cut(s)	29, 149
DpnII	GATC	2 cut(s)	27, 147
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	323
FaeI	CATG	4 cut(s)	71, 181, 314, 333
FaiI	YATR	5 cut(s)	69, 179, 312, 323, 331
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	67, 177, 310, 329
Fnu4HI	GCNGC	4 cut(s)	136, 182, 335, 415
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	136, 182, 335, 415
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	4 cut(s)	136, 182, 335, 415
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	71, 181, 314, 333
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	326, 343
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	152, 366, 384
Hpy188III	TCNNGA	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	242, 279, 297, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 423
Hsp92II	CATG	4 cut(s)	71, 181, 314, 333
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	27, 147
LpnPI	CCDG	6 cut(s)	107, 216, 243, 265, 360, 369
Lsp1109I	GCAGC	4 cut(s)	147, 168, 321, 426
MaeI	CTAG	1 cut(s)	225
MalI	GATC	2 cut(s)	29, 149
MboI	GATC	2 cut(s)	27, 147
MboII	GAAGA	2 cut(s)	218, 397
MluCI	AATT	2 cut(s)	63, 292
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	2 cut(s)	186, 344
MnlI	CCTC	3 cut(s)	160, 260, 398
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	2 cut(s)	17, 117
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	303, 423
NdeII	GATC	2 cut(s)	27, 147
NlaIII	CATG	4 cut(s)	71, 181, 314, 333
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	1 cut(s)	181
PasI	CCCWGGG	1 cut(s)	230
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	137, 183, 336, 416
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	17, 117
SatI	GCNGC	4 cut(s)	136, 182, 335, 415
Sau3AI	GATC	2 cut(s)	27, 147
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	4 cut(s)	115, 271, 284, 308
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	63, 292
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	192, 432
TasI	AATT	2 cut(s)	63, 292
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	17, 117
Tru9I	TTAA	2 cut(s)	17, 117
TseI	GCWGC	4 cut(s)	135, 181, 334, 414
TspDTI	ATGAA	2 cut(s)	56, 318
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.