Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

31688722 .. 31689261

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1176900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTTTTGAGGTAAAAACAATCTTCTGGGATTTTAGTGTGCTAATAAAAGATCAAATCTTTCTGGGGTTTTGTACAATTTCTAGGGTTATGGCAATGGAGATTTTAATCTCTGTGATCCTACTGTTCGTGGGGATTGTTGTTTTAGTAGTAATTCATGTTTGTATTGTTGGGAGAGCATTCAACAGAGCCAATAATCAAGGTGTTAATCTGGTTCAAAGAAGCAGCATTTTGGGGATCAAAAGGATGTCCAACGAGGAACTCAACATGCTGCCTTGCTTCGACTACACGGCAGAAGAGAAAGGGACTGCTACTAGCCCTGGGGATTGTGCAGTTTGCTTGGAAAGTTTCAAGGGAGGTGAAAAGTGCAGGTTGTTGCCAAATTGCAAGCACAGCTTCCATGCTCAATGCATAGATTCATGGCTGCTGAAGACTCCGGTTTGTCCGGTGTGTCGGACTTGTGCTAAAACTCCGAAGATTGATGTGAGTTTGGGAGGGGAAAGCAGCGTTTCGGGCGATTATCGAATCGAAATGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

180

Amino Acids

19.78

Weight (kDa)

7.48

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	109 - 152	2e-13	Ring finger domain
zf-RING_11	PF17123	109 - 138	6.2e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	110 - 151	3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	110 - 151	7.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	110 - 149	6.8e-06	RING-type zinc-finger
zf-rbx1	PF12678	113 - 152	3.7e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	112, 245
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	184, 218, 352
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
AlwI	GGATC	2 cut(s)	112, 245
ApeKI	GCWGC	4 cut(s)	225, 271, 424, 504
AsuHPI	GGTGA	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	237, 258, 411, 516
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	2 cut(s)	84, 315
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	4 cut(s)	226, 272, 425, 505
BlsI	GCNGC	4 cut(s)	227, 273, 426, 506
Bme1390I	CCNGG	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	319, 320
BsaWI	WCCGGW	2 cut(s)	436, 445
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	319, 320
BseGI	GGATG	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	102
BseXI	GCAGC	4 cut(s)	237, 258, 411, 516
BsgI	GTGCAG	2 cut(s)	351, 388
BsiSI	CCGG	2 cut(s)	437, 446
BslFI	GGGAC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	52, 117, 237
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	2 cut(s)	112, 245
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	319, 320
BssMI	GATC	3 cut(s)	52, 117, 237
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	55, 120, 240
BstMBI	GATC	3 cut(s)	52, 117, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 513
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	4 cut(s)	237, 258, 411, 516
BstV2I	GAAGAC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	158, 268, 401, 420
CviJI	RGCY	4 cut(s)	191, 318, 396, 424
CviKI_1	RGCY	4 cut(s)	191, 318, 396, 424
CviQI	GTAC	1 cut(s)	75
DpnI	GATC	3 cut(s)	54, 119, 239
DpnII	GATC	3 cut(s)	52, 117, 237
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	4 cut(s)	161, 271, 404, 423
FaiI	YATR	6 cut(s)	92, 159, 269, 402, 413, 421
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	4 cut(s)	157, 267, 400, 419
Fnu4HI	GCNGC	4 cut(s)	226, 272, 425, 505
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	4 cut(s)	226, 272, 425, 505
FspBI	CTAG	2 cut(s)	84, 315
GluI	GCNGC	4 cut(s)	226, 272, 425, 505
HapII	CCGG	2 cut(s)	437, 446
Hin1II	CATG	4 cut(s)	161, 271, 404, 423
HinfI	GANTC	3 cut(s)	416, 433, 525
HpaII	CCGG	2 cut(s)	437, 446
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	456, 474
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	4 cut(s)	332, 369, 387, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 513
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	4 cut(s)	161, 271, 404, 423
Kzo9I	GATC	3 cut(s)	52, 117, 237
LpnPI	CCDG	8 cut(s)	13, 50, 197, 306, 333, 355, 450, 459
Lsp1109I	GCAGC	4 cut(s)	237, 258, 411, 516
MaeI	CTAG	2 cut(s)	84, 315
MaeII	ACGT	1 cut(s)	536
MalI	GATC	3 cut(s)	54, 119, 239
MboI	GATC	3 cut(s)	52, 117, 237
MboII	GAAGA	4 cut(s)	16, 308, 442, 487
MluCI	AATT	3 cut(s)	78, 153, 382
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	276, 434
MnlI	CCTC	4 cut(s)	4, 250, 350, 488
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	2 cut(s)	107, 207
MspI	CCGG	2 cut(s)	437, 446
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	393, 513
NdeII	GATC	3 cut(s)	52, 117, 237
NlaIII	CATG	4 cut(s)	161, 271, 404, 423
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	271
PasI	CCCWGGG	1 cut(s)	320
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	416, 525
PkrI	GCNGC	4 cut(s)	227, 273, 426, 506
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	107, 207
SatI	GCNGC	4 cut(s)	226, 272, 425, 505
Sau3AI	GATC	3 cut(s)	52, 117, 237
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	6 cut(s)	15, 205, 361, 374, 398, 539
Sse9I	AATT	3 cut(s)	78, 153, 382
SspMI	CTAG	2 cut(s)	84, 315
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	3 cut(s)	282, 523, 528
TasI	AATT	3 cut(s)	78, 153, 382
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	416, 525
Tru1I	TTAA	2 cut(s)	107, 207
Tru9I	TTAA	2 cut(s)	107, 207
TseI	GCWGC	4 cut(s)	225, 271, 424, 504
TspDTI	ATGAA	2 cut(s)	146, 408
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	2 cut(s)	84, 315
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.