Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

10821182 .. 10821971

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGGTGCAACCTTTTTTGCAACGCCATATATATTCCTGCCATAATTTTAAAAAATGCAATGTGTTTAGCCACAGTCTAGCTTCAGTCGCAGAAACCATTTATCTCTACATTCAAAGCCAGAGTTTCGAACTTGATCGTTTCGTTCGATCCAGAAATCAGAAACCAATTAAGTCAGACTCAATGGAAAATCATACTTCGTTCTCACAACCTTTCATCCTCATATACAACATGTTTTCTGAAGGCTTTTATTTCTCACCTCGCCCCGCTCTATTTTCAGATCTCCCAGCCAACATCATTGCATGCATCTCAATAGTCACCTTGTTATTTCTGATCTTTAATCACATTCTCAACGTTTTCCTTGAATGGCTCCTTCAAGTCATCCCTGAGCATGATCTCGAGGGAGGTGACGTTGTTTATGGACCACAAATTAACATCATTGGTTCGAGCCCCTTTCGTGTAGCTATAGTGCAAAACATGCAGAGGCTGGGAGTGATAAAGAGGGTCGTGCCGGAGTTTGATGAAGGAAGAGGGCCAAGGCTTAGGGCCTCGAAGAAATTGCCACCACTAGTCAATCATGGAAGCCATGAAATACAATCAAGTTCAAAATGCGCTTCATGTGCAATTTGCTTGGAGGATTTTGCTCAAGGTGATTCATGCCAAGTTTTTTCAATGTGCAACCACATGTTCCATGCCAATTGCATTGACCATTGGTTGATGAACAAGCCAAATTGCCCAGTTTGTCGACATTGTATCATGGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

29.14

Weight (kDa)

7.59

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	745
AciI	CCGC	1 cut(s)	267
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	69, 261
AflIII	ACRYGT	2 cut(s)	231, 684
AgsI	TTSAA	5 cut(s)	116, 365, 377, 606, 672
AhlI	ACTAGT	1 cut(s)	568
AluBI	AGCT	2 cut(s)	83, 464
AluI	AGCT	2 cut(s)	83, 464
AlwI	GGATC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	533, 546
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	3 cut(s)	422, 533, 546
AsuHPI	GGTGA	4 cut(s)	249, 310, 419, 662
AsuII	TTCGAA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	452
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	2 cut(s)	80, 569
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	422, 533, 546
BmiI	GGNNCC	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	731
Bpu10I	CCTNAGC	2 cut(s)	387, 542
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse1I	ACTGG	1 cut(s)	737
Bse3DI	GCAATG	2 cut(s)	67, 297
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	3 cut(s)	216, 381, 766
BseMI	GCAATG	2 cut(s)	67, 297
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	737
BseYI	CCCAGC	2 cut(s)	286, 487
BshFI	GGCC	2 cut(s)	535, 548
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	512
BsnI	GGCC	2 cut(s)	535, 548
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	5 cut(s)	136, 149, 280, 333, 394
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	2 cut(s)	535, 548
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	67, 297
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	5 cut(s)	136, 149, 280, 333, 394
BssT1I	CCWWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	387, 542
BstF5I	GGATG	3 cut(s)	216, 381, 766
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	5 cut(s)	139, 152, 283, 336, 397
BstMBI	GATC	5 cut(s)	136, 149, 280, 333, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 478, 620
BstNSI	RCATGY	4 cut(s)	235, 306, 481, 688
BstSFI	CTRYAG	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	535, 548
BtsCI	GGATG	3 cut(s)	216, 381, 766
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	487
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	3 cut(s)	422, 533, 546
DdeI	CTNAG	2 cut(s)	387, 542
DpnI	GATC	5 cut(s)	138, 151, 282, 335, 396
DpnII	GATC	5 cut(s)	136, 149, 280, 333, 394
DraI	TTTAAA	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	69, 261
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	536
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	745
FokI	GGATG	2 cut(s)	203, 368
FriOI	GRGCYC	1 cut(s)	452
FspBI	CTAG	2 cut(s)	80, 569
GlaI	GCGC	1 cut(s)	613
GsaI	CCCAGC	2 cut(s)	290, 491
HaeIII	GGCC	2 cut(s)	535, 548
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	1 cut(s)	614
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	746
HindII	GTYRAC	1 cut(s)	746
HinfI	GANTC	2 cut(s)	179, 653
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	4 cut(s)	249, 310, 419, 662
Hpy166II	GTNNAC	1 cut(s)	746
Hpy188I	TCNGA	5 cut(s)	162, 178, 241, 280, 333
Hpy188III	TCNNGA	2 cut(s)	153, 398
Hpy8I	GTNNAC	1 cut(s)	746
HpyAV	CCTTC	3 cut(s)	236, 383, 518
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	354, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 478, 620
HpyF3I	CTNAG	2 cut(s)	387, 542
HpySE526I	ACGT	2 cut(s)	354, 411
HspAI	GCGC	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	136, 149, 280, 333, 394
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	8 cut(s)	52, 134, 166, 300, 399, 473, 525, 750
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	80, 569
MaeII	ACGT	2 cut(s)	354, 411
MaeIII	GTNAC	2 cut(s)	316, 407
MalI	GATC	5 cut(s)	138, 151, 282, 335, 396
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	5 cut(s)	136, 149, 280, 333, 394
MboII	GAAGA	2 cut(s)	540, 565
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	7 cut(s)	46, 168, 429, 557, 624, 697, 730
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	9 cut(s)	230, 270, 394, 398, 477, 495, 524, 559, 628
Mph1103I	ATGCAT	1 cut(s)	308
MseI	TTAA	4 cut(s)	51, 171, 339, 432
MspI	CCGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	89, 478, 620
NdeII	GATC	5 cut(s)	136, 149, 280, 333, 394
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	316, 407
NsiI	ATGCAT	1 cut(s)	308
NspI	RCATGY	4 cut(s)	235, 306, 481, 688
NspV	TTCGAA	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	398
PciI	ACATGT	2 cut(s)	231, 684
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	653
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	2 cut(s)	231, 684
Psp1406I	AACGTT	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	286, 487
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	3 cut(s)	422, 533, 546
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	744
SaqAI	TTAA	4 cut(s)	51, 171, 339, 432
Sau3AI	GATC	5 cut(s)	136, 149, 280, 333, 394
Sau96I	GGNCC	3 cut(s)	422, 533, 546
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	398, 645
SmoI	CTYRAG	2 cut(s)	398, 645
SpeI	ACTAGT	1 cut(s)	568
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	7 cut(s)	46, 168, 429, 557, 624, 697, 730
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	80, 569
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	357, 414
TaqI	TCGA	6 cut(s)	129, 148, 399, 446, 551, 745
TasI	AATT	7 cut(s)	46, 168, 429, 557, 624, 697, 730
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	4 cut(s)	51, 171, 339, 432
Tru9I	TTAA	4 cut(s)	51, 171, 339, 432
TseFI	GTSAC	2 cut(s)	316, 407
Tsp45I	GTSAC	2 cut(s)	316, 407
TspDTI	ATGAA	7 cut(s)	17, 205, 537, 603, 606, 645, 734
VpaK11BI	GGWCC	1 cut(s)	422
XceI	RCATGY	4 cut(s)	235, 306, 481, 688
XhoI	CTCGAG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	745
XspI	CTAG	2 cut(s)	80, 569
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.