Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

28532296 .. 28533651

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTGCCATTGTTGTGATTTTCATATCCATTTGCATCGTCGCGTTCTCGTTATTGCTTTTGTTAATCTCTATTGCCATTCTTTACATAATCTGGGACTACTTCCGGCAGAACCGTCAAAGCGATATTGAATCGGGAGAAGATGAAAGATTGCATCAACCAGATATTACTTATGATAACGTGGAATGGCATGAGCAAGCTGCATTTTATCAAGCGGCTATGATGCACAATATGCGGGTGCTGGAGATTTTAGACAGAGTTATCGAGGACTTGGAAGAAAGAAAAGAGCGAAGGAAAAGGCGAGAGCGAAATCGAGCCTTGGAGAAGAAATTGCCACCAAGAATCAGTTATGGAAGCCATGAAAGTGAAATGAATTGCAAGGATTGCGCCATCTGCTTGGAGGAATTTGAGACTGGGGAGATGTGTCAAGCTCTTCCTTCTTGCAACGTACCATGCTTTTCATTGCAGCTGCATAAATCATTGGTTCAGGGAGAATCTGACCTGCCCTATTTGCCGACAACGTGTAATAGGCTTATGACTGAAAATTGTAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

21.66

Weight (kDa)

5.11

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	215, 235
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	1 cut(s)	450
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	3 cut(s)	200, 431, 469
AluI	AGCT	3 cut(s)	200, 431, 469
Alw26I	GTCTC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	200, 466, 469
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	187, 456, 478
BccI	CCATC	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	4 cut(s)	201, 216, 467, 470
BlsI	GCNGC	4 cut(s)	202, 217, 468, 471
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	45, 163, 213
BmuI	ACTGGG	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	3 cut(s)	187, 456, 478
Bsh1236I	CGCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	215, 235
BspFNI	CGCG	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	2 cut(s)	232, 384
BstC8I	GCNNGC	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 384, 393, 511
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	187, 456, 478
BstXI	CCANNNNNNTGG	1 cut(s)	397
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	3 cut(s)	191, 359, 453
CviJI	RGCY	7 cut(s)	200, 218, 317, 357, 431, 469, 532
CviKI_1	RGCY	7 cut(s)	200, 218, 317, 357, 431, 469, 532
CviQI	GTAC	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	194, 362, 456
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	190, 358, 452
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	201, 216, 467, 470
Fsp4HI	GCNGC	4 cut(s)	201, 216, 467, 470
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	4 cut(s)	201, 216, 467, 470
GsuI	CTGGAG	1 cut(s)	263
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	194, 362, 456
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	131, 342, 494
HpaII	CCGG	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	285, 447
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	3 cut(s)	180, 447, 521
HpyCH4V	TGCA	8 cut(s)	36, 154, 203, 226, 378, 444, 466, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 384, 393, 511
HpySE526I	ACGT	3 cut(s)	180, 447, 521
Hsp92II	CATG	3 cut(s)	194, 362, 456
HspAI	GCGC	1 cut(s)	387
LguI	GCTCTTC	1 cut(s)	438
LpnPI	CCDG	7 cut(s)	79, 119, 174, 227, 399, 473, 515
Lsp1109I	GCAGC	3 cut(s)	187, 456, 478
LweI	GCATC	3 cut(s)	45, 163, 213
MaeII	ACGT	3 cut(s)	180, 447, 521
MboII	GAAGA	4 cut(s)	152, 287, 337, 425
MluCI	AATT	4 cut(s)	329, 373, 404, 544
MnlI	CCTC	2 cut(s)	259, 394
MseI	TTAA	2 cut(s)	65, 556
MslI	CAYNNNNRTG	2 cut(s)	14, 363
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	232, 384, 393, 511
NlaIII	CATG	3 cut(s)	194, 362, 456
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	131, 342, 494
PkrI	GCNGC	4 cut(s)	202, 217, 468, 471
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	14, 363
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	65, 556
SatI	GCNGC	4 cut(s)	201, 216, 467, 470
SetI	ASST	7 cut(s)	183, 202, 433, 450, 471, 504, 524
SfaNI	GCATC	3 cut(s)	45, 163, 213
SmiMI	CAYNNNNRTG	2 cut(s)	14, 363
Sse9I	AATT	4 cut(s)	329, 373, 404, 544
SsiI	CCGC	2 cut(s)	215, 235
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	3 cut(s)	183, 450, 524
TaqI	TCGA	2 cut(s)	264, 313
TasI	AATT	4 cut(s)	329, 373, 404, 544
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	131, 342, 494
Tru1I	TTAA	2 cut(s)	65, 556
Tru9I	TTAA	2 cut(s)	65, 556
TseI	GCWGC	3 cut(s)	200, 466, 469
TspDTI	ATGAA	5 cut(s)	13, 159, 375, 386, 450
XapI	RAATTY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.