Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

28467573 .. 28504010

Gene Structure 36438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTGAACATATTCCTTGCCTGGATTCTCGAAGCTATCCCGGAACTCGATCCTGAATCAGGAGGTATTATTTACGGAACCCTGATTAATGTTGGTTCGAACAATCAATTTCGTCAAGCTGTACTGCGATTTCTGCAGAGATTAGGAGTCATAAAGGATGTCATACAGGAAATAGATGCAAAACGAGGGCCACGGCTTAGGGACATGAAGAAATTGCCACCACTAGTGCATTATGGAAGCAATGGAATTGAATTGTCGAGTTCAAGGAGTACTACTGACTGTGCAATTTGTTTGGAGGATTTTTCAGAAGGCGAGTCATGTCAAGTTTTTCCAATGTGCAAGCATGTTTTCCATTCGAATTGCATTGACCATTGGTTGGTGAATAGGTCTACTTGCCCAATTTGTCGAAACTTTCTTTCACCTTTTTCTATCTCTGCCATTGTTGTGATTTTCATATTCATTTGCATCGTTGCGTTCTCGTTATTGCTTTTGTTAATCGCCATTGCCATTCTTTACATAATCTGGGACTACTTCCGGCAGAACCGTCAAAGCGATATTGAATCGGGAGAAGATGAAAGATTGCATCAACCAGATATTACTTATGATAACGTGGAATGGCATGAGCAAGCTGCATTTTATCAAGCGGCTATGATGCACAATATGCGGGTGCTGGAGATTTTAGACAGAGTTATCGAGGAATTGGAAGAAAGAAAAGAGCGAAGGAAAAGGCGAGAGCGAAATCGAGCCTTGGAGAAGAAATTGCCACCAAAAATCAGTTATGGAAGCCATGAAAGTGAAATGAATTGCAAGGATTGCGCCATCTGCTTGGAGGAATTTGAGACTAGGGAGATGTGTCAAGCTCTTCCTTCTTGCAACATGTATATTCTGTGCAGTAAAGTGATTGTAAATTCATGGAAAAATAGAGGGTTTGGTTACAATATTGAAAGTGTAGAGTATCATGGTGACTTTCAGTTTCCATTGGCTTGTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

331

Amino Acids

38.33

Weight (kDa)

5.67

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	93 - 136	6.2e-14	Ring finger domain
zf-RING_11	PF17123	93 - 122	3.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	94 - 135	5.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	94 - 133	5.7e-06	RING-type zinc-finger
zf-rbx1	PF12678	97 - 136	1.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	2 cut(s)	644, 664
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	833, 907
AfaI	GTAC	2 cut(s)	123, 271
AfiI	CCNNNNNNNGG	2 cut(s)	59, 376
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	5 cut(s)	7, 251, 264, 560, 944
AhlI	ACTAGT	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	35, 119, 629, 860
AluI	AGCT	4 cut(s)	35, 119, 629, 860
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	2 cut(s)	833, 907
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	391, 411, 974
AsuII	TTCGAA	2 cut(s)	98, 356
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	1 cut(s)	827
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	833
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	224, 843
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	630, 645
BlsI	GCNGC	2 cut(s)	631, 646
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	22, 41
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	22, 41
BmsI	GCATC	4 cut(s)	166, 474, 592, 642
BpmI	CTGGAG	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	2 cut(s)	98, 356
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	191, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 376
Bse3DI	GCAATG	2 cut(s)	247, 501
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	191, 747
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	59, 376
BseMI	GCAATG	2 cut(s)	247, 501
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	910
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	41, 535
BslFI	GGGAC	2 cut(s)	215, 539
BslI	CCNNNNNNNGG	2 cut(s)	59, 376
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	2 cut(s)	215, 539
BsnI	GGCC	1 cut(s)	190
Bsp119I	TTCGAA	2 cut(s)	98, 356
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	644, 664
BspANI	GGCC	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	867
BspT104I	TTCGAA	2 cut(s)	98, 356
BsrDI	GCAATG	2 cut(s)	247, 501
BssECI	CCNNGG	2 cut(s)	191, 747
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	281, 545
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	2 cut(s)	661, 813
BstBI	TTCGAA	2 cut(s)	98, 356
BstC8I	GCNNGC	2 cut(s)	341, 627
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 661, 813, 822, 989
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	347, 880
BstSCI	CCNGG	2 cut(s)	20, 39
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	616
BstXI	CCANNNNNNTGG	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	341, 627
CfoI	GCGC	1 cut(s)	818
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	122, 270
CviAII	CATG	8 cut(s)	205, 318, 344, 620, 788, 877, 912, 959
CviQI	GTAC	2 cut(s)	122, 270
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	8 cut(s)	208, 321, 347, 623, 791, 880, 915, 962
FaqI	GGGAC	2 cut(s)	215, 539
FatI	CATG	8 cut(s)	204, 317, 343, 619, 787, 876, 911, 958
FauI	CCCGC	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	630, 645
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	630, 645
FspBI	CTAG	2 cut(s)	224, 843
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	2 cut(s)	630, 645
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	41, 535
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	8 cut(s)	208, 321, 347, 623, 791, 880, 915, 962
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HinfI	GANTC	5 cut(s)	25, 56, 147, 314, 560
HpaII	CCGG	2 cut(s)	41, 535
HphI	GGTGA	3 cut(s)	391, 411, 974
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	29, 53, 60, 564
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	3 cut(s)	302, 714, 876
HpyCH4III	ACNGT	2 cut(s)	281, 545
HpyCH4IV	ACGT	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 661, 813, 822, 989
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	8 cut(s)	208, 321, 347, 623, 791, 880, 915, 962
HspAI	GCGC	1 cut(s)	816
Kzo9I	GATC	1 cut(s)	49
LguI	GCTCTTC	1 cut(s)	867
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	4 cut(s)	166, 474, 592, 642
MaeI	CTAG	2 cut(s)	224, 843
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	2 cut(s)	932, 962
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	5 cut(s)	220, 581, 716, 766, 854
MlyI	GAGTC	2 cut(s)	156, 323
MnlI	CCTC	6 cut(s)	56, 179, 289, 688, 823, 917
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	87, 494
MslI	CAYNNNNRTG	2 cut(s)	443, 792
MspI	CCGG	2 cut(s)	41, 535
MspR9I	CCNGG	2 cut(s)	22, 41
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	5 cut(s)	133, 661, 813, 822, 989
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	8 cut(s)	208, 321, 347, 623, 791, 880, 915, 962
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	962
NspI	RCATGY	2 cut(s)	347, 880
NspV	TTCGAA	2 cut(s)	98, 356
PciI	ACATGT	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	25, 56, 560
PflMI	CCANNNNNTGG	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	631, 646
PleI	GAGTC	2 cut(s)	155, 322
PpsI	GAGTC	2 cut(s)	155, 322
PscI	ACATGT	1 cut(s)	876
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	138
RsaI	GTAC	2 cut(s)	123, 271
RsaNI	GTAC	2 cut(s)	122, 270
RseI	CAYNNNNRTG	2 cut(s)	443, 792
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	87, 494
SatI	GCNGC	2 cut(s)	630, 645
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	2 cut(s)	156, 323
ScrFI	CCNGG	2 cut(s)	22, 41
SetI	ASST	8 cut(s)	37, 67, 121, 389, 424, 612, 631, 862
SfaNI	GCATC	4 cut(s)	166, 474, 592, 642
SfcI	CTRYAG	1 cut(s)	134
SfuI	TTCGAA	2 cut(s)	98, 356
SmiMI	CAYNNNNRTG	2 cut(s)	443, 792
SpeI	ACTAGT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	644, 664
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	2 cut(s)	224, 843
StyD4I	CCNGG	2 cut(s)	20, 39
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	2 cut(s)	281, 545
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	8 cut(s)	30, 48, 98, 257, 356, 406, 693, 742
TatI	WGTACW	2 cut(s)	121, 269
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	25, 56, 560
Tru1I	TTAA	2 cut(s)	87, 494
Tru9I	TTAA	2 cut(s)	87, 494
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	7 cut(s)	221, 442, 448, 588, 804, 815, 900
TspGWI	ACGGA	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	376
VspI	ATTAAT	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	2 cut(s)	833, 907
XceI	RCATGY	2 cut(s)	347, 880
XmiI	GTMKAC	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	224, 843
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.