Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Reverse (-)

3007604 .. 3008317

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTCATGGAAATCGTTATCTCTGTGATTCTACTGTTTGTTGGGATTGCTGTTTTGGTGGTGATTCATGTTTGCATAGTTGGGAGAGCGTTCAATGGAGGCAGTAACATTCAAGGAGTTAATACGGTGGTTCAAAGAAGAAGCATTGGGATGAAAAGGATGTCCATTGAGGAATTGAATATGCTTCCTTGCTTCGACTACAAGAAAGGAGGTACCGCTAGCCCTGTGGAATGTGCAGTTTGTTTGGAAGATCTCAAGACGGGAGAAAAGTGCAGGTTGCTGCCAAATTGCGGGCACAGCTTCCATGCTCAATGCATAGACTCGTGGTTGTTGAAGACGCCGGTTTGTCCGGTTTGCCGGAGTTGTGTCAATTCTTCAAAGATTGATGCGAGTGTGGGTGAGGGAGCTAGTGTTTCAGCTTTTCAGACACAACATATGAGGCAAAGGCTGTCTTGCTTTGCCTCTTTTCTTTTCCAACGTAGGCATGTTGTTGTTGGACGCAACTCGCAAGCTTTCTTGTTTCTGTGCTTGTGGAGTATTTGTATGCTCTGTACTTTTGTTATTGGGTTCCATAGTCCCCTCTGTATAGTGTATCCTGCTACTCACTCTGCGAGACACCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010966 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043269 GO:0043412 GO:0043632 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051049 GO:0051239 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070417 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

209

Amino Acids

22.94

Weight (kDa)

8.87

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	77 - 120	8.9e-14	Ring finger domain
zf-RING_11	PF17123	77 - 106	9.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	77 - 119	8.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	78 - 117	9e-07	RING-type zinc-finger
zf-C3HC4	PF00097	78 - 119	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	80 - 120	1.4e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	216, 291
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	214, 553
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	94, 113, 134, 178, 334, 378
AluBI	AGCT	4 cut(s)	300, 407, 419, 512
AluI	AGCT	4 cut(s)	300, 407, 419, 512
Alw26I	GTCTC	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	73, 410
AsuNHI	GCTAGC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	2 cut(s)	219, 408
BfuAI	ACCTGC	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	603
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	214, 569
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	340
BseGI	GGATG	2 cut(s)	156, 165
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	267
BsgI	GTGCAG	2 cut(s)	255, 292
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	341, 350, 358
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	2 cut(s)	216, 291
BspLI	GGNNCC	2 cut(s)	214, 569
BspMI	ACCTGC	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	36, 127
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	220, 293, 510
BstF5I	GGATG	2 cut(s)	156, 165
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	156, 165
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	220, 293, 510
Cfr10I	RCCGGY	1 cut(s)	340
CseI	GACGC	2 cut(s)	346, 507
Csp6I	GTAC	2 cut(s)	213, 552
CviAII	CATG	4 cut(s)	7, 68, 305, 485
CviJI	RGCY	6 cut(s)	222, 300, 407, 419, 448, 512
CviKI_1	RGCY	6 cut(s)	222, 300, 407, 419, 448, 512
CviQI	GTAC	2 cut(s)	213, 552
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	317
FaeI	CATG	4 cut(s)	10, 71, 308, 488
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	4 cut(s)	6, 67, 304, 484
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	163, 172
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	219, 408
GluI	GCNGC	1 cut(s)	281
HapII	CCGG	3 cut(s)	341, 350, 358
HgaI	GACGC	2 cut(s)	346, 507
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	10, 71, 308, 488
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	3 cut(s)	28, 64, 320
HpaII	CCGG	3 cut(s)	341, 350, 358
HphI	GGTGA	2 cut(s)	73, 410
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	36, 127
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	4 cut(s)	75, 236, 273, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	4 cut(s)	10, 71, 308, 488
KpnI	GGTACC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	6 cut(s)	237, 259, 354, 363, 371, 609
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	219, 408
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	4 cut(s)	150, 260, 346, 366
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	173, 286, 370
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	475, 499
MnlI	CCTC	7 cut(s)	92, 163, 203, 394, 432, 472, 590
Mph1103I	ATGCAT	1 cut(s)	317
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	3 cut(s)	341, 350, 358
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	1 cut(s)	250
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	10, 71, 308, 488
NlaIV	GGNNCC	2 cut(s)	214, 569
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	28, 64
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	214, 569
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	214, 553
RsaNI	GTAC	2 cut(s)	213, 552
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	7 cut(s)	214, 278, 302, 409, 421, 481, 514
SfaNI	GCATC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	173, 286, 370
SsiI	CCGC	2 cut(s)	216, 291
SspMI	CTAG	2 cut(s)	219, 408
TaaI	ACNGT	2 cut(s)	36, 127
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	173, 286, 370
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	28, 64
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	56, 167
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	2 cut(s)	219, 408
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.