Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

8246160 .. 8246510

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAGGCATTGGTGATATGTTTGCTAGTGATTTTCGCCGCGGTGATTGCGGTACCAGTGGAGAGTCGTCGGAAGCATCTAGACTATGGTGTGATTACCAAGTGCGCTGGTCCTAATCCTCCTCCAGGATGCTATCCTCCCGGAGCCCAACAGAAGAATCCTACTCCTGCTAACGAGTATAGACGTGGCTGCAGCAAAATTACTCGGTGCAAGCGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

7.98

Weight (kDa)

9.67

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	10 - 72	7.6e-16	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	2 cut(s)	41, 216
AciI	CCGC	3 cut(s)	39, 41, 50
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	189, 192
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	107, 216
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	25, 55
AvaII	GGWCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	176, 204
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	2 cut(s)	26, 80
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	3 cut(s)	39, 190, 193
BlsI	GCNGC	3 cut(s)	40, 191, 194
Bme1390I	CCNGG	2 cut(s)	126, 141
Bme18I	GGWCC	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	54, 145
BmrFI	CCNGG	2 cut(s)	126, 141
BmsI	GCATC	2 cut(s)	85, 119
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	176, 204
Bsh1236I	CGCG	2 cut(s)	41, 216
BshNI	GGYRCC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	3 cut(s)	39, 41, 50
BspFNI	CGCG	2 cut(s)	41, 216
BspLI	GGNNCC	2 cut(s)	54, 145
BspMAI	CTGCAG	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	2 cut(s)	41, 216
BstHHI	GCGC	2 cut(s)	107, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	124, 139
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	2 cut(s)	41, 216
BstV1I	GCAGC	2 cut(s)	176, 204
BtgI	CCRYGG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	2 cut(s)	107, 216
Cfr13I	GGNCC	1 cut(s)	110
Cfr42I	CCGCGG	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	53
CviJI	RGCY	2 cut(s)	146, 189
CviKI_1	RGCY	2 cut(s)	146, 189
CviQI	GTAC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	3 cut(s)	19, 87, 180
Fnu4HI	GCNGC	3 cut(s)	39, 190, 193
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	39, 190, 193
FspBI	CTAG	2 cut(s)	26, 80
GlaI	GCGC	2 cut(s)	106, 215
GluI	GCNGC	3 cut(s)	39, 190, 193
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	107, 216
Hin6I	GCGC	2 cut(s)	105, 214
HinP1I	GCGC	2 cut(s)	105, 214
HinfI	GANTC	2 cut(s)	64, 157
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	25, 55
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	192, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	184
HspAI	GCGC	2 cut(s)	105, 214
KpnI	GGTACC	1 cut(s)	56
KspI	CCGCGG	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	69, 93, 111, 138, 154, 180
Lsp1109I	GCAGC	2 cut(s)	176, 204
LweI	GCATC	2 cut(s)	85, 119
MaeI	CTAG	2 cut(s)	26, 80
MaeII	ACGT	1 cut(s)	184
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	129, 132, 147
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	126, 141
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	41, 216
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	54, 145
PfeI	GAWTC	1 cut(s)	157
PfoI	TCCNGGA	2 cut(s)	124, 139
PkrI	GCNGC	3 cut(s)	40, 191, 194
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	54, 145
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	3 cut(s)	39, 190, 193
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	126, 141
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	85, 119
SfcI	CTRYAG	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	3 cut(s)	39, 41, 50
SspMI	CTAG	2 cut(s)	26, 80
StyD4I	CCNGG	2 cut(s)	124, 139
TaiI	ACGT	1 cut(s)	187
TasI	AATT	1 cut(s)	198
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	189, 192
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	2 cut(s)	26, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.