Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

9165667 .. 9166820

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAAGGCATGGATGATAATCTTGTTGGTGATTTGTGTCGCTGTGGTGGTGGAGCAATCAGAGGCTCGCAAAGGTCGAAAGTATTTAAATCCAGGCGTGCTTGACCGGTGTCGTGGTCCTAATCCTCCAGCGGGATGTCATCCTCACAATTCCCACCACAAACCTCGCGTCCCTGTTCACAATTATAGTCGTGGTTGTAGTAGAATTACCCGGTGCAGACGAGATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

76

Amino Acids

8.61

Weight (kDa)

10.31

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	10 - 74	1.4e-17	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AsiGI	ACCGGT	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	93, 211
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	93, 211
BmsI	GCATC	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	3 cut(s)	18, 139, 140
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	106, 211
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	67, 98
BstF5I	GGATG	3 cut(s)	18, 139, 140
BstFNI	CGCG	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	93
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	91, 209
BstUI	CGCG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	18, 139, 140
Cac8I	GCNNGC	2 cut(s)	67, 98
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
DraI	TTTAAA	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	12
FaiI	YATR	2 cut(s)	10, 186
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	8
FauI	CCCGC	1 cut(s)	124
FokI	GGATG	3 cut(s)	25, 126, 147
FspBI	CTAG	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	2 cut(s)	106, 211
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	12
HpaII	CCGG	2 cut(s)	106, 211
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	6 cut(s)	78, 105, 119, 141, 186, 224
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	229
MluCI	AATT	3 cut(s)	148, 181, 204
MnlI	CCTC	4 cut(s)	55, 135, 153, 174
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	2 cut(s)	106, 211
MspR9I	CCNGG	2 cut(s)	93, 211
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	93, 211
SetI	ASST	2 cut(s)	76, 166
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	116
SmiI	ATTTAAAT	1 cut(s)	87
Sse9I	AATT	3 cut(s)	148, 181, 204
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	91, 209
SwaI	ATTTAAAT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	148, 181, 204
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	116
XspI	CTAG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.