Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023017.1

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

17487 .. 18654

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023017.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgaaggctctgcctagtcggagtatggtggttgcagccggatggggatgtagttggtttgggcgtggtgtcgtgcggcatctcttttgcttccacacggtgacggcggctgttcatggagcacgatggtggacggggagacaaggattcaaaggctgggcttctctaattttgatgcgtggtggctatggctggtggagcagtgatcagtgtcgatggtcagttgaccatggatggggacagaggtatgttggtggtcatcaggccctatgtcatagggctgatggctgggtgagtggaggggggtggtggcctggagatgagaagatcagctgggcaattcttggttttctgatgattgctcttaggctggtgtcggagatttggggaaaggagggagagggctgtggctggttcttattcttgattagggttttagacaagatcatggggctatcaaacatgaaatccttgatcgtctgtgtgctcatcattcacatggtggcgttgaaccatggagtcacagcaaataacaaatttattgaccctggagttcttgatccttgccaaagaccaggtggaccgcacccgggttgttatcctaataacaacaacagtgagccaaagcctgcaaatccttatagtcgcggttgctcaaaacttactcgttgtcgatcagatccacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

229

Amino Acids

25.44

Weight (kDa)

9.42

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AciI	CCGC	4 cut(s)	76, 107, 584, 648
AclWI	GGATC	2 cut(s)	554, 674
AcsI	RAATTY	1 cut(s)	536
AdeI	CACNNNGTG	2 cut(s)	100, 502
AfiI	CCNNNNNNNGG	2 cut(s)	235, 590
AgsI	TTSAA	2 cut(s)	151, 511
AjnI	CCWGG	3 cut(s)	313, 547, 574
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	2 cut(s)	124, 489
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	554, 674
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	2 cut(s)	264, 311
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	265, 581
AsuC2I	CCSGG	2 cut(s)	590, 591
AsuHPI	GGTGA	2 cut(s)	112, 304
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	581
Bbv12I	GWGCWC	2 cut(s)	124, 489
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	5 cut(s)	36, 120, 210, 228, 278
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	3 cut(s)	315, 549, 576
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	590, 591
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	36, 77, 108
BlsI	GCNGC	3 cut(s)	37, 78, 109
Bme1390I	CCNGG	5 cut(s)	315, 549, 576, 590, 591
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	265, 581
BmrFI	CCNGG	5 cut(s)	315, 549, 576, 590, 591
BmsI	GCATC	2 cut(s)	88, 165
BpmI	CTGGAG	2 cut(s)	336, 570
BpuMI	CCSGG	2 cut(s)	590, 591
BsaJI	CCNNGG	4 cut(s)	229, 514, 547, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 590
BseBI	CCWGG	3 cut(s)	315, 549, 576
BseDI	CCNNGG	4 cut(s)	229, 514, 547, 589
BseGI	GGATG	3 cut(s)	47, 53, 239
BseLI	CCNNNNNNNGG	2 cut(s)	235, 590
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	3 cut(s)	156, 288, 333
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	266, 313
BsiHKAI	GWGCWC	2 cut(s)	124, 489
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	39, 590
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	235, 590
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	266, 313
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	124, 489
Bsp143I	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
Bsp19I	CCATGG	2 cut(s)	229, 514
BspACI	CCGC	4 cut(s)	76, 107, 584, 648
BspANI	GGCC	2 cut(s)	266, 313
BspFNI	CGCG	1 cut(s)	648
BspPI	GGATC	2 cut(s)	554, 674
BssECI	CCNNGG	4 cut(s)	229, 514, 547, 589
BssMI	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
BssT1I	CCWWGG	2 cut(s)	229, 514
Bst2UI	CCWGG	3 cut(s)	315, 549, 576
Bst4CI	ACNGT	3 cut(s)	100, 617, 687
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	2 cut(s)	229, 514
BstF5I	GGATG	3 cut(s)	47, 53, 239
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	7 cut(s)	208, 330, 447, 477, 562, 677, 682
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	3 cut(s)	315, 549, 576
BstSCI	CCNGG	5 cut(s)	313, 547, 574, 588, 589
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	266, 313
BtgI	CCRYGG	2 cut(s)	229, 514
BtsCI	GGATG	3 cut(s)	47, 53, 239
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	208, 215, 622
Cac8I	GCNNGC	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	265, 581
Cfr9I	CCCGGG	1 cut(s)	589
CsiI	ACCWGGT	1 cut(s)	574
CviAII	CATG	6 cut(s)	116, 230, 448, 463, 499, 515
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	7 cut(s)	207, 329, 446, 476, 561, 676, 681
DpnII	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
DraIII	CACNNNGTG	2 cut(s)	100, 502
Eco130I	CCWWGG	2 cut(s)	229, 514
Eco47I	GGWCC	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	313, 547, 574
EcoT14I	CCWWGG	2 cut(s)	229, 514
ErhI	CCWWGG	2 cut(s)	229, 514
FaeI	CATG	6 cut(s)	119, 233, 451, 466, 502, 518
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	6 cut(s)	115, 229, 447, 462, 498, 514
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	36, 77, 108
FokI	GGATG	3 cut(s)	54, 60, 246
Fsp4HI	GCNGC	3 cut(s)	36, 77, 108
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	3 cut(s)	36, 77, 108
GsaI	CCCAGC	3 cut(s)	160, 292, 337
GsuI	CTGGAG	2 cut(s)	336, 570
HaeIII	GGCC	2 cut(s)	266, 313
HapII	CCGG	2 cut(s)	39, 590
Hin1II	CATG	6 cut(s)	119, 233, 451, 466, 502, 518
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	147, 519
HpaII	CCGG	2 cut(s)	39, 590
HphI	GGTGA	2 cut(s)	112, 304
Hpy166II	GTNNAC	3 cut(s)	132, 226, 581
Hpy188I	TCNGA	4 cut(s)	21, 354, 379, 679
Hpy188III	TCNNGA	2 cut(s)	424, 557
Hpy8I	GTNNAC	3 cut(s)	132, 226, 581
HpyCH4III	ACNGT	3 cut(s)	100, 617, 687
HpyCH4V	TGCA	2 cut(s)	35, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	6 cut(s)	119, 233, 451, 466, 502, 518
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
LmnI	GCTCC	2 cut(s)	119, 198
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	88, 165
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	100, 520
MalI	GATC	7 cut(s)	207, 329, 446, 476, 561, 676, 681
MboI	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	124, 489
MluCI	AATT	3 cut(s)	168, 339, 536
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	237, 293, 388, 394
MslI	CAYNNNNRTG	2 cut(s)	127, 497
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	39, 590
MspR9I	CCNGG	5 cut(s)	315, 549, 576, 590, 591
MvaI	CCWGG	3 cut(s)	315, 549, 576
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	590, 591
NcoI	CCATGG	2 cut(s)	229, 514
NdeII	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
NlaIII	CATG	6 cut(s)	119, 233, 451, 466, 502, 518
NmuCI	GTSAC	2 cut(s)	100, 520
OliI	CACNNNNGTG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	37, 78, 109
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	313, 547, 574
PspFI	CCCAGC	3 cut(s)	156, 288, 333
PspGI	CCWGG	3 cut(s)	313, 547, 574
PspPI	GGNCC	2 cut(s)	265, 581
PsuI	RGATCY	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	127, 497
SatI	GCNGC	3 cut(s)	36, 77, 108
Sau3AI	GATC	7 cut(s)	205, 327, 444, 474, 559, 674, 679
Sau96I	GGNCC	2 cut(s)	265, 581
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	5 cut(s)	315, 549, 576, 590, 591
SduI	GDGCHC	2 cut(s)	124, 489
SetI	ASST	3 cut(s)	248, 335, 580
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	2 cut(s)	88, 165
SinI	GGWCC	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	127, 497
Sse9I	AATT	3 cut(s)	168, 339, 536
SsiI	CCGC	4 cut(s)	76, 107, 584, 648
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	5 cut(s)	313, 547, 574, 588, 589
StyI	CCWWGG	2 cut(s)	229, 514
TaaI	ACNGT	3 cut(s)	100, 617, 687
TaqI	TCGA	2 cut(s)	214, 673
TasI	AATT	3 cut(s)	168, 339, 536
TauI	GCSGC	2 cut(s)	79, 110
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	3 cut(s)	208, 215, 622
TseFI	GTSAC	2 cut(s)	100, 520
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	100, 520
TspDTI	ATGAA	3 cut(s)	17, 104, 479
TspMI	CCCGGG	1 cut(s)	589
TspRI	CASTG	3 cut(s)	208, 215, 622
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XmaI	CCCGGG	1 cut(s)	589
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.