Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

8247726 .. 8248181

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAAGGCATGGCTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTGGAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCCTCCGGGATGCAATCCTCCCGGGGCCGAACAAAAGAACCCTACTCCCGTTAACGAGTATAGCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048018 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

7.88

Weight (kDa)

8.61

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	10 - 71	4.8e-17	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	38, 213
AciI	CCGC	2 cut(s)	38, 50
AcsI	RAATTY	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	186, 189
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	38, 213
AspS9I	GGNCC	2 cut(s)	107, 141
AsuC2I	CCSGG	3 cut(s)	123, 138, 139
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	173, 201
BceAI	ACGGC	1 cut(s)	165
BcnI	CCSGG	3 cut(s)	123, 138, 139
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	3 cut(s)	39, 187, 190
BlsI	GCNGC	3 cut(s)	40, 188, 191
Bme1390I	CCNGG	3 cut(s)	123, 138, 139
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	107, 141
BmiI	GGNNCC	2 cut(s)	54, 142
BmrFI	CCNGG	3 cut(s)	123, 138, 139
BmsI	GCATC	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	123, 138, 139
BsaJI	CCNNGG	3 cut(s)	137, 138, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	137, 138, 181
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	173, 201
Bsh1236I	CGCG	2 cut(s)	38, 213
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	105, 122, 138
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	137
BspACI	CCGC	2 cut(s)	38, 50
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	2 cut(s)	38, 213
BspLI	GGNNCC	2 cut(s)	54, 142
BspMAI	CTGCAG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	137, 138, 181
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	2 cut(s)	38, 213
BstHHI	GCGC	2 cut(s)	38, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 186
BstSCI	CCNGG	3 cut(s)	121, 136, 137
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	2 cut(s)	38, 213
BstV1I	GCAGC	2 cut(s)	173, 201
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 63
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	38, 213
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	107, 141
Cfr9I	CCCGGG	1 cut(s)	137
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	4 cut(s)	13, 143, 180, 186
CviKI_1	RGCY	4 cut(s)	13, 143, 180, 186
Eco47I	GGWCC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	137
FaeI	CATG	1 cut(s)	12
FaiI	YATR	5 cut(s)	10, 19, 77, 84, 177
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	39, 187, 190
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	39, 187, 190
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	37, 212
GluI	GCNGC	3 cut(s)	39, 187, 190
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	3 cut(s)	105, 122, 138
HhaI	GCGC	2 cut(s)	38, 213
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	36, 211
HinP1I	GCGC	2 cut(s)	36, 211
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	105, 122, 138
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	129, 189, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 186
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	2 cut(s)	36, 211
KspAI	GTTAAC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	69, 118, 135, 151, 193
Lsp1109I	GCAGC	2 cut(s)	173, 201
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	26
MluCI	AATT	2 cut(s)	70, 195
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	126, 129, 144
MseI	TTAA	2 cut(s)	93, 168
MspI	CCGG	3 cut(s)	105, 122, 138
MspR9I	CCNGG	3 cut(s)	123, 138, 139
MvnI	CGCG	2 cut(s)	38, 213
MwoI	GCNNNNNNNGC	2 cut(s)	47, 186
NciI	CCSGG	3 cut(s)	123, 138, 139
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	2 cut(s)	54, 142
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	40, 188, 191
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	54, 142
PspPI	GGNCC	2 cut(s)	107, 141
PstI	CTGCAG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	93, 168
SatI	GCNGC	3 cut(s)	39, 187, 190
Sau96I	GGNCC	2 cut(s)	107, 141
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	123, 138, 139
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	70, 195
SsiI	CCGC	2 cut(s)	38, 50
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	121, 136, 137
TasI	AATT	2 cut(s)	70, 195
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	93, 168
Tru9I	TTAA	2 cut(s)	93, 168
TscAI	CASTG	2 cut(s)	48, 63
TseI	GCWGC	2 cut(s)	186, 189
TspDTI	ATGAA	2 cut(s)	17, 188
TspMI	CCCGGG	1 cut(s)	137
TspRI	CASTG	2 cut(s)	48, 63
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.