Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

57986358 .. 57989120

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGGAGCCGCCGCGGCAAAAACCCAGGGGACGGGCTGCTGGGGTCGGCGGCAGACTTGAGGGTCAGGGCAAGTGTGAGTGGCTGCGGGGATCTGGTCAAAAAGGCGGATAATGACGATGATGCTGCGATGAGTCAAGGCGAAGGAGCCACCACGGGCATTAGCCTTGATAATCTTGGCAACTCCCATGGCTCTGGATTCATGGTCCTCTGGAGAAACAAGTGTTGGCAATTTGATCACGATACTTCTACCTATAAAGGTTTGAGCTATGTTTTGAATGAGACGATTGTAGCAGCTTTTCTTCGGCATCAGAAATGTCACACTTCAGCTAGCTTCCAACGCGTTGCAAGAACTGAGATTGATTGCTTCCTCCAACAACATAACTGCAGTGGAGGTATTATGGACTCCTCAGGTATCGTCATGTTTGACCGCAACAAGTACTTGAACCTCCTCAGCTATCTTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.11

Weight (kDa)

6.94

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccII	CGCG	2 cut(s)	15, 342
AciI	CCGC	7 cut(s)	10, 13, 15, 50, 87, 107, 430
AclWI	GGATC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	277, 445
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AluBI	AGCT	5 cut(s)	267, 296, 329, 333, 456
AluI	AGCT	5 cut(s)	267, 296, 329, 333, 456
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	37, 84, 125, 293
AspS9I	GGNCC	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	409
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	24, 71, 112, 305
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	8 cut(s)	10, 13, 16, 38, 51, 85, 126, 294
BlsI	GCNGC	8 cut(s)	11, 14, 17, 39, 52, 86, 127, 295
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	8, 148
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	112, 316
BmtI	GCTAGC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	79
BsaJI	CCNNGG	5 cut(s)	13, 25, 26, 153, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse21I	CCTNAGG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	13, 25, 26, 153, 187
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	345, 423, 466
BseRI	GAGGAG	2 cut(s)	397, 440
BseXI	GCAGC	4 cut(s)	24, 71, 112, 305
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	15, 342
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	91, 235
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	7 cut(s)	10, 13, 15, 50, 87, 107, 430
BspCNI	CTCAG	3 cut(s)	346, 422, 465
BspFNI	CGCG	2 cut(s)	15, 342
BspLI	GGNNCC	2 cut(s)	8, 148
BspMAI	CTGCAG	1 cut(s)	389
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	99
BssECI	CCNNGG	5 cut(s)	13, 25, 26, 153, 187
BssMI	GATC	2 cut(s)	91, 235
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	3 cut(s)	354, 409, 452
BstDSI	CCRYGG	3 cut(s)	13, 153, 187
BstFNI	CGCG	2 cut(s)	15, 342
BstKTI	GATC	2 cut(s)	94, 238
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	91, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 339
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	2 cut(s)	15, 342
BstV1I	GCAGC	4 cut(s)	24, 71, 112, 305
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	409
BtgI	CCRYGG	3 cut(s)	13, 153, 187
BtgZI	GCGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	205
Cfr42I	CCGCGG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	3 cut(s)	188, 202, 421
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	354, 409, 452
DpnI	GATC	2 cut(s)	93, 237
DpnII	GATC	2 cut(s)	91, 235
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	309
Eco81I	CCTNAGG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	3 cut(s)	191, 205, 424
FaiI	YATR	7 cut(s)	189, 203, 255, 270, 381, 401, 422
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	187, 201, 420
FauI	CCCGC	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	8 cut(s)	10, 13, 16, 38, 51, 85, 126, 294
Fsp4HI	GCNGC	8 cut(s)	10, 13, 16, 38, 51, 85, 126, 294
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	8 cut(s)	10, 13, 16, 38, 51, 85, 126, 294
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	232
Hin1II	CATG	3 cut(s)	191, 205, 424
HinfI	GANTC	3 cut(s)	133, 198, 404
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	195, 211, 239
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	347, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 339
HpyF3I	CTNAG	3 cut(s)	354, 409, 452
Hsp92II	CATG	3 cut(s)	191, 205, 424
Ksp22I	TGATCA	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	91, 235
LmnI	GCTCC	2 cut(s)	6, 146
LpnPI	CCDG	8 cut(s)	12, 26, 39, 52, 80, 180, 196, 396
Lsp1109I	GCAGC	4 cut(s)	24, 71, 112, 305
LweI	GCATC	2 cut(s)	112, 316
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	93, 237
MboI	GATC	2 cut(s)	91, 235
MboII	GAAGA	2 cut(s)	293, 452
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	230
MluI	ACGCGT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	142, 398
MmeI	TCCRAC	2 cut(s)	361, 397
MnlI	CCTC	7 cut(s)	54, 218, 380, 386, 418, 458, 461
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	2 cut(s)	15, 342
MwoI	GCNNNNNNNGC	2 cut(s)	15, 339
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	91, 235
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	191, 205, 424
NlaIV	GGNNCC	2 cut(s)	8, 148
NmuCI	GTSAC	1 cut(s)	317
PasI	CCCWGGG	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	8 cut(s)	11, 14, 17, 39, 52, 86, 127, 295
PleI	GAGTC	2 cut(s)	141, 398
PpsI	GAGTC	2 cut(s)	141, 398
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	8, 148
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SacII	CCGCGG	1 cut(s)	16
SatI	GCNGC	8 cut(s)	10, 13, 16, 38, 51, 85, 126, 294
Sau3AI	GATC	2 cut(s)	91, 235
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	2 cut(s)	142, 398
ScrFI	CCNGG	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	112, 316
SfcI	CTRYAG	1 cut(s)	385
Sfr303I	CCGCGG	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	7 cut(s)	10, 13, 15, 50, 87, 107, 430
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	187
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	4 cut(s)	12, 15, 18, 53
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	37, 84, 125, 293
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.