Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

17572887 .. 17573839

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGACGGCAGCGGTTCATGGAGCACGATGGTGGACGGGGAGACAAGAATTCAACAGCTGGGCTTCTCTGATTTTGATGCGTGGTGGCTATGGTTGGTGGAGCGGTGATCAATGTCGATGGTTAGTTGATTATGGATGGGGACAGTGGTATGTTGTTGATAGTCAGGCCCTATGGAAAAGGGTTGATGGCTGGGTGAGTGGAGGGGGGTGGCGGCCTAGAGATGAGAAGATCAGCTGGGCAATTCTTGGTTCTCTGATGATTACTCTTAGGCTAGTGTCGAAGCTTTGGGGAAAGGAAGGAGAGGGCTGCGGCTGGCAACTTAGAATTAATATACCCAACGTGTCCCTTAAATTGTTAAAATATGATACATGTGTACACGGTGGAAGTACTATAGTAGGGAAATTTGGCAACTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

9.51

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	4 cut(s)	14, 105, 214, 312
AcsI	RAATTY	2 cut(s)	50, 404
AfaI	GTAC	2 cut(s)	378, 391
AflIII	ACRYGT	2 cut(s)	342, 371
AgsI	TTSAA	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	60, 237, 286
AluI	AGCT	3 cut(s)	60, 237, 286
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	168, 215
ApeKI	GCWGC	2 cut(s)	11, 309
ApoI	RAATTY	2 cut(s)	50, 404
AseI	ATTAAT	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	16, 119, 208
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	23, 296
BccI	CCATC	4 cut(s)	24, 114, 132, 182
BceAI	ACGGC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	219, 275
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	4 cut(s)	12, 215, 310, 313
BlsI	GCNGC	4 cut(s)	13, 216, 311, 314
BmcAI	AGTACT	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	69
BseGI	GGATG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	23, 296
BseYI	CCCAGC	3 cut(s)	60, 192, 237
BshFI	GGCC	2 cut(s)	170, 217
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	156, 331
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	156, 331
BsnI	GGCC	2 cut(s)	170, 217
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	109, 231
BspACI	CCGC	4 cut(s)	14, 105, 214, 312
BspANI	GGCC	2 cut(s)	170, 217
BsrBI	CCGCTC	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	376
BssMI	GATC	2 cut(s)	109, 231
Bst4CI	ACNGT	2 cut(s)	147, 383
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	269, 323
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	112, 234
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	109, 231
BstNSI	RCATGY	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	23, 296
BsuRI	GGCC	2 cut(s)	170, 217
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	377, 390
CviAII	CATG	2 cut(s)	20, 372
CviQI	GTAC	2 cut(s)	377, 390
DdeI	CTNAG	2 cut(s)	269, 323
DpnI	GATC	2 cut(s)	111, 233
DpnII	GATC	2 cut(s)	109, 231
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	23, 375
FaiI	YATR	9 cut(s)	21, 93, 135, 153, 175, 335, 366, 373, 395
FaqI	GGGAC	2 cut(s)	156, 331
FatI	CATG	2 cut(s)	19, 371
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	12, 215, 310, 313
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	12, 215, 310, 313
FspBI	CTAG	2 cut(s)	219, 275
GluI	GCNGC	4 cut(s)	12, 215, 310, 313
GsaI	CCCAGC	3 cut(s)	64, 196, 241
HaeIII	GGCC	2 cut(s)	170, 217
Hin1II	CATG	2 cut(s)	23, 375
HindIII	AAGCTT	1 cut(s)	284
HphI	GGTGA	3 cut(s)	16, 119, 208
Hpy166II	GTNNAC	3 cut(s)	36, 377, 379
Hpy188I	TCNGA	2 cut(s)	72, 258
Hpy8I	GTNNAC	3 cut(s)	36, 377, 379
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	147, 383
HpyCH4IV	ACGT	1 cut(s)	342
HpyF3I	CTNAG	2 cut(s)	269, 323
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	23, 375
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	109, 231
LmnI	GCTCC	2 cut(s)	23, 102
LpnPI	CCDG	5 cut(s)	46, 152, 178, 223, 301
Lsp1109I	GCAGC	2 cut(s)	23, 296
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	219, 275
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	111, 233
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	2 cut(s)	109, 231
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	5 cut(s)	50, 243, 327, 353, 404
MnlI	CCTC	2 cut(s)	197, 298
MseI	TTAA	3 cut(s)	330, 351, 359
MslI	CAYNNNNRTG	1 cut(s)	31
MspA1I	CMGCKG	3 cut(s)	14, 60, 237
NdeII	GATC	2 cut(s)	109, 231
NlaIII	CATG	2 cut(s)	23, 375
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	31
PciI	ACATGT	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	13, 216, 311, 314
PscI	ACATGT	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	330
PspFI	CCCAGC	3 cut(s)	60, 192, 237
PspPI	GGNCC	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	60, 237
RsaI	GTAC	2 cut(s)	378, 391
RsaNI	GTAC	2 cut(s)	377, 390
RseI	CAYNNNNRTG	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	330, 351, 359
SatI	GCNGC	4 cut(s)	12, 215, 310, 313
Sau3AI	GATC	2 cut(s)	109, 231
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	4 cut(s)	62, 239, 288, 345
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	31
Sse9I	AATT	5 cut(s)	50, 243, 327, 353, 404
SsiI	CCGC	4 cut(s)	14, 105, 214, 312
SspMI	CTAG	2 cut(s)	219, 275
TaaI	ACNGT	2 cut(s)	147, 383
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	118, 281
TasI	AATT	5 cut(s)	50, 243, 327, 353, 404
TatI	WGTACW	2 cut(s)	376, 389
TauI	GCSGC	2 cut(s)	217, 315
Tru1I	TTAA	3 cut(s)	330, 351, 359
Tru9I	TTAA	3 cut(s)	330, 351, 359
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	11, 309
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	2 cut(s)	50, 404
XceI	RCATGY	1 cut(s)	375
XspI	CTAG	2 cut(s)	219, 275
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.