Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

9163340 .. 9163938

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25165.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAGACATTTATGATAATCTTGTTGGTGATTTGTAGCATCTTGATTGTAGGACGAGTTGAGGCTAACGATAACAAGAGAAAATATCTACTACTCGATCCATGCTTGCGTCCTAATGCTCCACCAGGATGTCATCGTCAGCCATATAAACCCCGTACTCCGGTTAACGTATATAGTCGTGGTTGCACCACAATCAACCGATGCCGCCGAGTGCAGAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

74

Amino Acids

8.52

Weight (kDa)

10.17

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	10 - 70	2.6e-13	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	124
AlwI	GGATC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	48, 191
BpiI	GAAGAC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	92
BssMI	GATC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	107
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	2 cut(s)	65, 142
CviKI_1	RGCY	2 cut(s)	65, 142
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	105
FaiI	YATR	6 cut(s)	14, 103, 145, 147, 172, 174
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	205
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	217
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	186, 214
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	105
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	111, 138, 174
LweI	GCATC	2 cut(s)	48, 191
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	16
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	48, 191
SmiMI	CAYNNNNRTG	1 cut(s)	127
SsiI	CCGC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.