Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

46059956 .. 46069748

Gene Structure 9793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG267900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGACAAGGACAAGAGCGGTACCGATCTGCTCGCTGCTGACCGTAAAAAGTTCCTTATTTTAGAAAAGAGATTGCGTGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAAGCAAGTGAATTATAGTCTCATATACAAGGCACCAGAGGAGAATGGAGGTAAGGCTACCTGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCTCAAGCCAAGATCATGGGGCTATCAAACATGAAATCCTTGATCCTCTGTGTGCTCATCATTCACATGGTGGCGTTGAACCATGGAGTCACAGCAAATAACAAATTTATTGACCCTGGAGTTCTTGATCCTTGCCAAAGACCAGGTGGACCGCACCCGGGTTGTCATCCGAAAAACAACAGCGGTGAGCCAAAGCCTGCTAATCCTTATAGCCGCGGTTGCTCAAAAGTTACTCGTTGTCGATCAGATCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

160

Amino Acids

17.48

Weight (kDa)

9.42

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	105 - 156	2.3e-12	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	20, 154
AccBSI	CCGCTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	441
AciI	CCGC	5 cut(s)	18, 377, 408, 439, 441
AclWI	GGATC	4 cut(s)	206, 262, 347, 467
AcsI	RAATTY	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	340, 367
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	4 cut(s)	206, 262, 347, 467
Ama87I	CYCGRG	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	383, 384
AsuHPI	GGTGA	2 cut(s)	210, 422
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	20, 154
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	342, 369
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	383, 384
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	36, 439
BlsI	GCNGC	2 cut(s)	37, 440
Bme1390I	CCNGG	4 cut(s)	342, 369, 383, 384
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	22, 156
BmrFI	CCNGG	4 cut(s)	342, 369, 383, 384
BmsI	GCATC	2 cut(s)	70, 128
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	2 cut(s)	383, 384
BsaJI	CCNNGG	4 cut(s)	307, 340, 382, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	342, 369
BseDI	CCNNGG	4 cut(s)	307, 340, 382, 439
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	441
BshNI	GGYRCC	2 cut(s)	20, 154
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	5 cut(s)	18, 377, 408, 439, 441
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	22, 156
BspPI	GGATC	4 cut(s)	206, 262, 347, 467
BspT107I	GGYRCC	2 cut(s)	20, 154
BsrBI	CCGCTC	1 cut(s)	18
BssECI	CCNNGG	4 cut(s)	307, 340, 382, 439
BssMI	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	342, 369
Bst4CI	ACNGT	2 cut(s)	44, 480
BstC8I	GCNNGC	2 cut(s)	33, 423
BstDSI	CCRYGG	2 cut(s)	307, 439
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	7 cut(s)	28, 201, 240, 270, 355, 470, 475
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	342, 369
BstSCI	CCNGG	4 cut(s)	340, 367, 381, 382
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	307, 439
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	33, 423
Cfr13I	GGNCC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	442
Cfr9I	CCCGGG	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	241, 256, 292, 308
CviJI	RGCY	6 cut(s)	179, 233, 247, 415, 421, 438
CviKI_1	RGCY	6 cut(s)	179, 233, 247, 415, 421, 438
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	7 cut(s)	27, 200, 239, 269, 354, 469, 474
DpnII	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
DraIII	CACNNNGTG	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	340, 367
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	244, 259, 295, 311
FaiI	YATR	9 cut(s)	85, 138, 146, 148, 242, 257, 293, 309, 435
FatI	CATG	4 cut(s)	240, 255, 291, 307
Fnu4HI	GCNGC	2 cut(s)	36, 439
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	36, 439
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	36, 439
GsuI	CTGGAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	4 cut(s)	244, 259, 295, 311
HinfI	GANTC	1 cut(s)	312
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	210, 422
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	396, 472
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	44, 480
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	244, 259, 295, 311
KpnI	GGTACC	1 cut(s)	24
KspI	CCGCGG	1 cut(s)	442
Kzo9I	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
LpnPI	CCDG	8 cut(s)	171, 196, 327, 354, 354, 381, 396, 435
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	70, 128
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	185, 313, 454
MalI	GATC	7 cut(s)	27, 200, 239, 269, 354, 469, 474
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	133, 329
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	4 cut(s)	98, 154, 164, 281
Mph1103I	ATGCAT	1 cut(s)	85
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	408, 441
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	4 cut(s)	342, 369, 383, 384
MvaI	CCWGG	2 cut(s)	342, 369
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	2 cut(s)	383, 384
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
NlaIII	CATG	4 cut(s)	244, 259, 295, 311
NlaIV	GGNNCC	2 cut(s)	22, 156
NmuCI	GTSAC	2 cut(s)	185, 313
NsiI	ATGCAT	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	37, 440
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	340, 367
PspGI	CCWGG	2 cut(s)	340, 367
PspN4I	GGNNCC	2 cut(s)	22, 156
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	290
SacII	CCGCGG	1 cut(s)	442
SatI	GCNGC	2 cut(s)	36, 439
Sau3AI	GATC	7 cut(s)	25, 198, 237, 267, 352, 467, 472
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	4 cut(s)	342, 369, 383, 384
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	109, 175, 185, 223, 373
SexAI	ACCWGGT	1 cut(s)	367
SfaNI	GCATC	2 cut(s)	70, 128
Sfr303I	CCGCGG	1 cut(s)	442
SgrBI	CCGCGG	1 cut(s)	442
SinI	GGWCC	1 cut(s)	374
SmaI	CCCGGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	133, 329
SsiI	CCGC	5 cut(s)	18, 377, 408, 439, 441
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	340, 367, 381, 382
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	44, 480
TaqI	TCGA	1 cut(s)	466
TasI	AATT	2 cut(s)	133, 329
TauI	GCSGC	1 cut(s)	441
TseFI	GTSAC	2 cut(s)	185, 313
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	185, 313
TspDTI	ATGAA	1 cut(s)	272
TspMI	CCCGGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.