Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

4196698 .. 4201654

Gene Structure 4957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTGGTTGCAGCCGGGCGGGGATGTAGTTGCTTTGGGCGTGGTGTCGTGCGGCATCTCTTTTGCTCCCTTATGGTGACGGCGGTGGTTCATGGAGAACGATGGTGGACGGAGAGACAAGGATTCAGCGGCTGGGCTTCTTTGACTTTGATGCGTGGTGGCTATGGCTGGTGGAGCGGTGATCAGTGTCGATGGTCAGTTGACCGTGGATGGGGACAGTGGTATGTTGGGGATAGTCAGGCCCTATGGCAAAGGGTTGATGGCTGGGTGAGTGGAGGGAGGTGGTGGTCTAGAGATGCGAAGATCAGCTGGGAACTTCTTGGTTTTCTAATGATTGCTCTTGGGCTGGTGTCGGAGCTTTGGGAAATGGAAGGAGAGGGCTGCGGCGGAATTCTGGGTTGGGGCAAAGAAGGCCACTATGCAGTTTGCAAGATAGCAGAGGGATATCTGAGTGAAGATGCTTTAGCTGCAGTGAGAGAATTGCTACCGGAATTTGTTGGAGGTGATCTTGCTGCAGTTTGCTCGTGGGCTGATCAGATTCGCTTTCATTATCATTGGAGTAGTGCTTTACACTATGTTGACACACCCGATTTTCTGTGTAACCACAATTACAGCAGAGACTGCCATGACTCTGCTGGACATAAGGGGAGATGTGTAACTGGAGCAATATACAACTTTACGATGCAACTTTTGACTTATCAGGAGTCCAACACAAAATCAAAATCTTCTACATGTTGGTTTCACCGGAGATCTAGGGTCGAACACAATAAGAGTCCGTTGATGGTTACTTTCTTTCTCGGCTGCCTGTCGTGGAGAAGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000014 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005576 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043765 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

275

Amino Acids

31.03

Weight (kDa)

7.13

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	134 - 241	1e-25	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	177
AciI	CCGC	8 cut(s)	19, 52, 83, 129, 177, 384, 387, 819
AcsI	RAATTY	2 cut(s)	390, 491
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	731
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	3 cut(s)	309, 358, 467
AluI	AGCT	3 cut(s)	309, 358, 467
Alw26I	GTCTC	2 cut(s)	109, 612
AlwNI	CAGNNNCTG	2 cut(s)	132, 621
AoxI	GGCC	2 cut(s)	240, 412
ApeKI	GCWGC	5 cut(s)	11, 381, 467, 512, 801
ApoI	RAATTY	2 cut(s)	390, 491
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	5 cut(s)	88, 191, 280, 515, 734
BauI	CACGAG	1 cut(s)	523
BbvI	GCAGC	5 cut(s)	23, 368, 454, 499, 788
BccI	CCATC	5 cut(s)	96, 186, 204, 254, 775
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BclI	TGATCA	2 cut(s)	181, 532
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	109, 612
BfaI	CTAG	3 cut(s)	291, 753, 823
BfmI	CTRYAG	2 cut(s)	468, 513
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	9 cut(s)	12, 53, 130, 382, 385, 468, 513, 802, 820
BlsI	GCNGC	9 cut(s)	13, 54, 131, 383, 386, 469, 514, 803, 821
Bme1390I	CCNGG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	5 cut(s)	64, 141, 286, 448, 672
BpmI	CTGGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	2 cut(s)	487, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	664
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	29, 215
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	664
BseXI	GCAGC	5 cut(s)	23, 368, 454, 499, 788
BseYI	CCCAGC	3 cut(s)	132, 264, 309
BshFI	GGCC	2 cut(s)	242, 414
BsiSI	CCGG	3 cut(s)	15, 488, 745
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	109, 612
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	242, 414
Bsp143I	GATC	5 cut(s)	181, 303, 505, 532, 749
BspACI	CCGC	8 cut(s)	19, 52, 83, 129, 177, 384, 387, 819
BspANI	GGCC	2 cut(s)	242, 414
BspCNI	CTCAG	1 cut(s)	441
BspMAI	CTGCAG	2 cut(s)	472, 517
BsrBI	CCGCTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	181, 303, 505, 532, 749
BssSI	CACGAG	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	523
Bst4CI	ACNGT	2 cut(s)	206, 219
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	29, 215
BstKTI	GATC	5 cut(s)	184, 306, 508, 535, 752
BstMAI	GTCTC	2 cut(s)	109, 612
BstMBI	GATC	5 cut(s)	181, 303, 505, 532, 749
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 411, 467, 621
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	468, 513
BstV1I	GCAGC	5 cut(s)	23, 368, 454, 499, 788
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BsuRI	GGCC	2 cut(s)	242, 414
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	29, 215
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	191, 224, 477
CaiI	CAGNNNCTG	2 cut(s)	132, 621
Cfr13I	GGNCC	1 cut(s)	241
CviAII	CATG	3 cut(s)	92, 626, 732
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	5 cut(s)	183, 305, 507, 534, 751
DpnII	GATC	5 cut(s)	181, 303, 505, 532, 749
EciI	GGCGGA	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	446
FaeI	CATG	3 cut(s)	95, 629, 735
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	91, 625, 731
FauI	CCCGC	1 cut(s)	12
FbaI	TGATCA	2 cut(s)	181, 532
Fnu4HI	GCNGC	9 cut(s)	12, 53, 130, 382, 385, 468, 513, 802, 820
FokI	GGATG	2 cut(s)	36, 222
Fsp4HI	GCNGC	9 cut(s)	12, 53, 130, 382, 385, 468, 513, 802, 820
FspBI	CTAG	3 cut(s)	291, 753, 823
GluI	GCNGC	9 cut(s)	12, 53, 130, 382, 385, 468, 513, 802, 820
GsaI	CCCAGC	3 cut(s)	136, 268, 313
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	242, 414
HapII	CCGG	3 cut(s)	15, 488, 745
Hin1II	CATG	3 cut(s)	95, 629, 735
HincII	GTYRAC	2 cut(s)	202, 580
HindII	GTYRAC	2 cut(s)	202, 580
HinfI	GANTC	5 cut(s)	123, 538, 629, 704, 772
HpaII	CCGG	3 cut(s)	15, 488, 745
HphI	GGTGA	5 cut(s)	88, 191, 280, 515, 734
Hpy166II	GTNNAC	3 cut(s)	108, 202, 580
Hpy188I	TCNGA	3 cut(s)	355, 450, 537
Hpy188III	TCNNGA	2 cut(s)	291, 701
Hpy8I	GTNNAC	3 cut(s)	108, 202, 580
HpyAV	CCTTC	2 cut(s)	365, 404
HpyCH4III	ACNGT	2 cut(s)	206, 219
HpyCH4V	TGCA	6 cut(s)	11, 422, 429, 470, 515, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 411, 467, 621
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	95, 629, 735
Ksp22I	TGATCA	2 cut(s)	181, 532
Kzo9I	GATC	5 cut(s)	181, 303, 505, 532, 749
LmnI	GCTCC	4 cut(s)	71, 174, 355, 662
Lsp1109I	GCAGC	5 cut(s)	23, 368, 454, 499, 788
LweI	GCATC	5 cut(s)	64, 141, 286, 448, 672
MaeI	CTAG	3 cut(s)	291, 753, 823
MaeIII	GTNAC	4 cut(s)	76, 599, 655, 784
MalI	GATC	5 cut(s)	183, 305, 507, 534, 751
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	5 cut(s)	181, 303, 505, 532, 749
MboII	GAAGA	3 cut(s)	313, 467, 717
MflI	RGATCY	1 cut(s)	749
MluCI	AATT	4 cut(s)	390, 479, 491, 607
MlyI	GAGTC	3 cut(s)	623, 713, 781
MmeI	TCCRAC	3 cut(s)	333, 478, 732
MnlI	CCTC	5 cut(s)	269, 273, 370, 433, 494
MspA1I	CMGCKG	2 cut(s)	129, 309
MspI	CCGG	3 cut(s)	15, 488, 745
MspR9I	CCNGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	174, 411, 467, 621
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	181, 303, 505, 532, 749
NlaIII	CATG	3 cut(s)	95, 629, 735
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	735
PciI	ACATGT	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	123, 538
PkrI	GCNGC	9 cut(s)	13, 54, 131, 383, 386, 469, 514, 803, 821
PleI	GAGTC	3 cut(s)	623, 712, 780
PpsI	GAGTC	3 cut(s)	623, 712, 780
PscI	ACATGT	1 cut(s)	731
PspFI	CCCAGC	3 cut(s)	132, 264, 309
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	2 cut(s)	472, 517
PstNI	CAGNNNCTG	2 cut(s)	132, 621
PsuI	RGATCY	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	309
SatI	GCNGC	9 cut(s)	12, 53, 130, 382, 385, 468, 513, 802, 820
Sau3AI	GATC	5 cut(s)	181, 303, 505, 532, 749
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	3 cut(s)	623, 713, 781
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	5 cut(s)	284, 311, 360, 469, 505
SfaNI	GCATC	5 cut(s)	64, 141, 286, 448, 672
SfcI	CTRYAG	2 cut(s)	468, 513
Sse9I	AATT	4 cut(s)	390, 479, 491, 607
SsiI	CCGC	8 cut(s)	19, 52, 83, 129, 177, 384, 387, 819
SspMI	CTAG	3 cut(s)	291, 753, 823
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	206, 219
TaqI	TCGA	2 cut(s)	190, 759
TasI	AATT	4 cut(s)	390, 479, 491, 607
TauI	GCSGC	4 cut(s)	55, 132, 387, 822
TfiI	GAWTC	2 cut(s)	123, 538
TscAI	CASTG	3 cut(s)	191, 224, 477
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	5 cut(s)	11, 381, 467, 512, 801
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	80, 536
TspGWI	ACGGA	2 cut(s)	125, 765
TspRI	CASTG	3 cut(s)	191, 224, 477
XapI	RAATTY	2 cut(s)	390, 491
XbaI	TCTAGA	1 cut(s)	290
XceI	RCATGY	1 cut(s)	735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XspI	CTAG	3 cut(s)	291, 753, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.