Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

24808951 .. 24810407

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTAGAGCTAAACTCCAAAGCCAACGCTGAAAGGAACCGCATTCACCCCGGAGTCCTCGACCCATGCAAAAGACCAGGAGGGCCACATCCTGGTTGTAACGGTGACGTCAAAAGTCCACCCCAACCCGGGAACCCCTATAACCACGGTTGCTCAAAGATTTATCGGTGTCGCGGTGGTCATGATAAGGTTGATACTCACAAGGTGAGGGAAAACATTTATATATTTATGTTGCAACTATTACCTACTTTGTTTCTATTCTATAGTGAGAATAAGGGTGATAAATCTTTTAGGCAAAGTATTTTAATTTTTTACATTGCTAGTAATATTTTTACTTATAAATTATTTATTAGGCTAATATCTAATTACTTAGTCCAATTGTTATATATTGAGACAACACTTTTTAAACATTTTAAGAAAGGACATTTTTTAAACCCGTGTAAGATGATGTCATGTCCGGTTTTTCCTGATTTGAATCATTCAAATTATATTTTTGTTTCTTTGCTGTTTTTCTTTCTCTCTGAAGTTTATCTGTTCCGATTTATATTTCGTCATCTCCCTCAATTATCTCTCGCCATAATTTGTATTGGAATCATTCAAGTTTTCTTCGAAGGTAAGTGTTTCTCTCAAGTTTATCTCTCTGAATTTATATGTTCCGATTTAGATTTTCAAAGTGTTTGTCTGATTTTTCAGTTTTTTATTGGTCGCATTGAGTTTTTTTGGATTGTTCTTGTTTTTTGCAGTCACGGTTTTTTAGTTTTGAAGATTTTGATTCGGCTTTTGTTTTTCATTAAAGTTCCTTTTGGTTTTTGCAGTGTATTTAGCATTTGGCGAAAGTTATTAATATTTATGCAGATCAGGGTGGGGGAGGTTGGGGGGGACCCCCCACATAAACATTTAATAATTTTCAGCGAAATACTTGTGCATCATCAGTGTACTTGTGCAATATCAGCTCATAGAATGTCATTCTGTGATAAATCCTTGGTCAATAAAAGCATATTTGATAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

338

Amino Acids

39.15

Weight (kDa)

9.11

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AatII	GACGTC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	40, 174
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	937
AfiI	CCNNNNNNNGG	3 cut(s)	92, 128, 129
AgsI	TTSAA	5 cut(s)	475, 483, 599, 671, 763
AjnI	CCWGG	2 cut(s)	76, 91
AluBI	AGCT	2 cut(s)	10, 953
AluI	AGCT	2 cut(s)	10, 953
Alw26I	GTCTC	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
AseI	ATTAAT	1 cut(s)	842
AspS9I	GGNCC	2 cut(s)	83, 880
AsuC2I	CCSGG	3 cut(s)	51, 129, 130
AsuHPI	GGTGA	4 cut(s)	38, 116, 217, 290
AsuII	TTCGAA	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	880
BciT130I	CCWGG	2 cut(s)	78, 93
BcnI	CCSGG	3 cut(s)	51, 129, 130
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	262
Bme1390I	CCNGG	5 cut(s)	51, 78, 93, 129, 130
Bme18I	GGWCC	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	83, 880
BmiI	GGNNCC	4 cut(s)	38, 134, 881, 882
BmrFI	CCNGG	5 cut(s)	51, 78, 93, 129, 130
BmsI	GCATC	1 cut(s)	934
BplI	GAGNNNNNCTC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	612
BpuMI	CCSGG	3 cut(s)	51, 129, 130
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	49, 128, 145, 981
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 128, 129
Bse3DI	GCAATG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	78, 93
BseDI	CCNNGG	4 cut(s)	49, 128, 145, 981
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	92, 128, 129
BseMI	GCAATG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	51, 129, 458
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	3 cut(s)	92, 128, 129
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	893
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	609
Bsp143I	GATC	1 cut(s)	855
BspACI	CCGC	2 cut(s)	40, 174
BspANI	GGCC	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	2 cut(s)	181, 1010
BspLI	GGNNCC	4 cut(s)	38, 134, 881, 882
BspT104I	TTCGAA	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	49, 128, 145, 981
BssMI	GATC	1 cut(s)	855
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	981
Bst2UI	CCWGG	2 cut(s)	78, 93
Bst4CI	ACNGT	3 cut(s)	104, 149, 749
BstACI	GRCGYC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	858
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	855
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	2 cut(s)	78, 93
BstSCI	CCNGG	5 cut(s)	49, 76, 91, 127, 128
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	2 cut(s)	820, 938
CciI	TCATGA	2 cut(s)	181, 1010
Cfr13I	GGNCC	2 cut(s)	83, 880
Cfr9I	CCCGGG	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	936
CviAII	CATG	4 cut(s)	66, 182, 453, 1011
CviJI	RGCY	6 cut(s)	10, 23, 85, 355, 778, 953
CviKI_1	RGCY	6 cut(s)	10, 23, 85, 355, 778, 953
CviQI	GTAC	1 cut(s)	936
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	857
DpnII	GATC	1 cut(s)	855
DraI	TTTAAA	2 cut(s)	406, 432
DraIII	CACNNNGTG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	76, 91
EcoT14I	CCWWGG	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	4 cut(s)	69, 185, 456, 1014
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	4 cut(s)	65, 181, 452, 1010
FokI	GGATG	1 cut(s)	75
FspBI	CTAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	3 cut(s)	51, 129, 458
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	69, 185, 456, 1014
HinfI	GANTC	4 cut(s)	54, 475, 591, 772
HpaII	CCGG	3 cut(s)	51, 129, 458
HphI	GGTGA	4 cut(s)	38, 116, 217, 290
Hpy166II	GTNNAC	2 cut(s)	119, 936
Hpy188I	TCNGA	5 cut(s)	523, 539, 643, 658, 684
Hpy188III	TCNNGA	3 cut(s)	182, 467, 1011
Hpy8I	GTNNAC	2 cut(s)	119, 936
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	104, 149, 749
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	7 cut(s)	69, 235, 741, 813, 853, 925, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	69, 185, 456, 1014
KflI	GGGWCCC	1 cut(s)	880
Kzo9I	GATC	1 cut(s)	855
LpnPI	CCDG	9 cut(s)	63, 64, 78, 90, 105, 142, 471, 480, 844
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	98, 104, 743
MalI	GATC	1 cut(s)	857
MboI	GATC	1 cut(s)	855
MboII	GAAGA	2 cut(s)	598, 775
MfeI	CAATTG	1 cut(s)	377
MluCI	AATT	9 cut(s)	306, 341, 364, 377, 484, 563, 579, 644, 903
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	68, 74, 201, 570, 862
MseI	TTAA	7 cut(s)	305, 405, 414, 431, 792, 842, 899
MspI	CCGG	3 cut(s)	51, 129, 458
MspR9I	CCNGG	5 cut(s)	51, 78, 93, 129, 130
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	78, 93
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	950
NciI	CCSGG	3 cut(s)	51, 129, 130
NdeII	GATC	1 cut(s)	855
NlaIII	CATG	4 cut(s)	69, 185, 456, 1014
NlaIV	GGNNCC	4 cut(s)	38, 134, 881, 882
NmuCI	GTSAC	2 cut(s)	104, 743
NspV	TTCGAA	1 cut(s)	609
PagI	TCATGA	2 cut(s)	181, 1010
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	475, 591, 772
PflMI	CCANNNNNTGG	1 cut(s)	92
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	880
PshBI	ATTAAT	1 cut(s)	842
PsiI	TTATAA	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	76, 91
PspGI	CCWGG	2 cut(s)	76, 91
PspN4I	GGNNCC	4 cut(s)	38, 134, 881, 882
PspPI	GGNCC	2 cut(s)	83, 880
PspPPI	RGGWCCY	1 cut(s)	880
RsaI	GTAC	1 cut(s)	937
RsaNI	GTAC	1 cut(s)	936
SaqAI	TTAA	7 cut(s)	305, 405, 414, 431, 792, 842, 899
Sau3AI	GATC	1 cut(s)	855
Sau96I	GGNCC	2 cut(s)	83, 880
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	5 cut(s)	51, 78, 93, 129, 130
SetI	ASST	8 cut(s)	12, 111, 192, 207, 247, 616, 873, 955
SfaNI	GCATC	1 cut(s)	934
SfcI	CTRYAG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	609
SinI	GGWCC	1 cut(s)	880
SmaI	CCCGGG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
Sse9I	AATT	9 cut(s)	306, 341, 364, 377, 484, 563, 579, 644, 903
SsiI	CCGC	2 cut(s)	40, 174
SspI	AATATT	2 cut(s)	328, 846
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	5 cut(s)	49, 76, 91, 127, 128
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	3 cut(s)	104, 149, 749
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	60, 609
TasI	AATT	9 cut(s)	306, 341, 364, 377, 484, 563, 579, 644, 903
TatI	WGTACW	1 cut(s)	935
TfiI	GAWTC	3 cut(s)	475, 591, 772
Tru1I	TTAA	7 cut(s)	305, 405, 414, 431, 792, 842, 899
Tru9I	TTAA	7 cut(s)	305, 405, 414, 431, 792, 842, 899
TscAI	CASTG	2 cut(s)	820, 938
TseFI	GTSAC	2 cut(s)	104, 743
Tsp45I	GTSAC	2 cut(s)	104, 743
TspDTI	ATGAA	2 cut(s)	778, 999
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	2 cut(s)	820, 938
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	880
VspI	ATTAAT	1 cut(s)	842
XapI	RAATTY	1 cut(s)	644
XmaI	CCCGGG	1 cut(s)	128
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.