Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Reverse (-)

31834255 .. 31835674

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGTTACAACTTGGAAGAAAAGGGTATTCAGGTTTTGCTCCAAAAAAGTCAAAGTCAAAACTTGGGTTTCTTCGTGTGGTGGTTTCCCTAGTTGGCGGCGCCCCAGCGCCGATGACGGCTCTGCCTAGTCGGAGTATGGTGGTTGCAGCTGGACGGGGATGTAGTTTCTTTGGGCGTGGTGTCGTGCGGCATCTCTTTTGCTTGCAGATGGTGACGGTGGCAGTTCATGGAGCACGATGGTGGGCGGGGAGACAAGGATTCAAAGGCTGGGCTTCTCTGATTTTGATGAGTGGTGGCTATGGCTGGTGGAGCGGTGATCAGTGTCGATGGTCAGTTGACCATGGATGGGGACAGTGGTATGTTGGTGGTAGTCAGGCCCTATGGCATAGGGTTGATGGTTGGGTGAGTGGAGGGGGGTGGTGGCCTAGAGATGAGAAGATCAGCTCGGCAATTCTTGGCTTTCTGATGTTTGCTCTTAGGCTGGTGTCGGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.2

Weight (kDa)

10.73

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	4 cut(s)	99, 190, 248, 315
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	152, 447, 496
AluI	AGCT	3 cut(s)	152, 447, 496
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	247
AoxI	GGCC	2 cut(s)	378, 425
ApeKI	GCWGC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	104, 112
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	226, 329, 418
BanI	GGYRCC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	5 cut(s)	205, 234, 324, 342, 392
BceAI	ACGGC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	3 cut(s)	92, 129, 429
BfoI	RGCGCY	2 cut(s)	105, 113
BisI	GCNGC	3 cut(s)	100, 150, 191
BlsI	GCNGC	3 cut(s)	101, 151, 192
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	167, 353
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	2 cut(s)	106, 270
BshFI	GGCC	2 cut(s)	380, 427
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	380, 427
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	319, 441
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	4 cut(s)	99, 190, 248, 315
BspANI	GGCC	2 cut(s)	380, 427
BspLI	GGNNCC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	319, 441
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	220, 357
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	479
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	167, 353
BstH2I	RGCGCY	2 cut(s)	105, 113
BstHHI	GCGC	2 cut(s)	104, 112
BstKTI	GATC	2 cut(s)	322, 444
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	319, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	380, 427
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	167, 353
BtsIMutI	CAGTG	2 cut(s)	329, 362
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	2 cut(s)	104, 112
Cfr13I	GGNCC	1 cut(s)	379
CviAII	CATG	2 cut(s)	230, 344
DdeI	CTNAG	1 cut(s)	479
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	2 cut(s)	321, 443
DpnII	GATC	2 cut(s)	319, 441
Eco130I	CCWWGG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	233, 347
FaiI	YATR	7 cut(s)	140, 231, 303, 345, 363, 385, 390
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	2 cut(s)	229, 343
FauI	CCCGC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	100, 150, 191
FokI	GGATG	2 cut(s)	174, 360
Fsp4HI	GCNGC	3 cut(s)	100, 150, 191
FspBI	CTAG	3 cut(s)	92, 129, 429
GlaI	GCGC	2 cut(s)	103, 111
GluI	GCNGC	3 cut(s)	100, 150, 191
GsaI	CCCAGC	2 cut(s)	110, 274
HaeII	RGCGCY	2 cut(s)	105, 113
HaeIII	GGCC	2 cut(s)	380, 427
HhaI	GCGC	2 cut(s)	104, 112
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	233, 347
Hin6I	GCGC	2 cut(s)	102, 110
HinP1I	GCGC	2 cut(s)	102, 110
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	261
HphI	GGTGA	3 cut(s)	226, 329, 418
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	135, 282, 468, 493
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	220, 357
HpyCH4V	TGCA	2 cut(s)	149, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	233, 347
HspAI	GCGC	2 cut(s)	102, 110
KasI	GGCGCC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 441
LmnI	GCTCC	4 cut(s)	46, 233, 312, 493
LpnPI	CCDG	7 cut(s)	18, 120, 138, 256, 292, 362, 470
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	92, 129, 429
MaeIII	GTNAC	2 cut(s)	6, 214
MalI	GATC	2 cut(s)	321, 443
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	2 cut(s)	319, 441
MboII	GAAGA	3 cut(s)	30, 65, 451
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	453
Mly113I	GGCGCC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	113, 471
MnlI	CCTC	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	312
NarI	GGCGCC	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	319, 441
NlaIII	CATG	2 cut(s)	233, 347
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	101, 151, 192
PluTI	GGCGCC	1 cut(s)	105
PspFI	CCCAGC	2 cut(s)	106, 270
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	241
SatI	GCNGC	3 cut(s)	100, 150, 191
Sau3AI	GATC	2 cut(s)	319, 441
Sau96I	GGNCC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	37, 154, 449, 498
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	4 cut(s)	99, 190, 248, 315
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	3 cut(s)	92, 129, 429
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	220, 357
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	453
TauI	GCSGC	2 cut(s)	102, 193
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	2 cut(s)	329, 362
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	329, 362
XspI	CTAG	3 cut(s)	92, 129, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.