Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

8249877 .. 8250208

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAAGGCATGGGTGATAGGTTTGCTAGTGATCTGCGCCGTGGTGATTGCGGAACCAGTGGAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCCTCCAGGATGCAATCCTCCCGGGACTGAACAAAAAAACCCTACTCCCGTTAACGAGTATAGCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

72

Amino Acids

7.88

Weight (kDa)

8.7

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	10 - 71	8e-17	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	186, 189
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	38, 213
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	138, 139
AsuHPI	GGTGA	2 cut(s)	25, 55
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	173, 201
BceAI	ACGGC	2 cut(s)	23, 165
BciT130I	CCWGG	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	138, 139
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	2 cut(s)	187, 190
BlsI	GCNGC	2 cut(s)	188, 191
Bme1390I	CCNGG	3 cut(s)	123, 138, 139
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	3 cut(s)	123, 138, 139
BmsI	GCATC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	138, 139
BsaJI	CCNNGG	3 cut(s)	39, 137, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	39, 137, 181
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	173, 201
Bsh1236I	CGCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	105, 138
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	39, 137, 181
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	209
BstDSI	CCRYGG	2 cut(s)	39, 181
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	38, 213
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	3 cut(s)	121, 136, 137
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	173, 201
BtgI	CCRYGG	2 cut(s)	39, 181
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	38, 213
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	107
Cfr9I	CCCGGG	1 cut(s)	137
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	2 cut(s)	180, 186
CviKI_1	RGCY	2 cut(s)	180, 186
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	12
FaiI	YATR	4 cut(s)	10, 77, 84, 177
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	187, 190
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	187, 190
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	37, 212
GluI	GCNGC	2 cut(s)	187, 190
GsuI	CTGGAG	1 cut(s)	105
HapII	CCGG	2 cut(s)	105, 138
HhaI	GCGC	2 cut(s)	38, 213
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	36, 211
HinP1I	GCGC	2 cut(s)	36, 211
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	105, 138
HphI	GGTGA	2 cut(s)	25, 55
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	129, 189, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	2 cut(s)	36, 211
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	69, 108, 118, 135, 151, 193
Lsp1109I	GCAGC	2 cut(s)	173, 201
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	26
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MluCI	AATT	2 cut(s)	70, 195
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	126, 129, 144
MseI	TTAA	2 cut(s)	93, 168
MspI	CCGG	2 cut(s)	105, 138
MspR9I	CCNGG	3 cut(s)	123, 138, 139
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	138, 139
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	188, 191
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	93, 168
SatI	GCNGC	2 cut(s)	187, 190
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	123, 138, 139
SetI	ASST	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	70, 195
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	121, 136, 137
TasI	AATT	2 cut(s)	70, 195
Tru1I	TTAA	2 cut(s)	93, 168
Tru9I	TTAA	2 cut(s)	93, 168
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	186, 189
TspDTI	ATGAA	2 cut(s)	17, 188
TspMI	CCCGGG	1 cut(s)	137
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.