Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006497

Physical Location & Seq

Genomic Coordinates Forward (+)

22288117 .. 22291725

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAATCAGTGATCCTCTGTGTGCTCATAACTAGCATGGTGGCATTGAACCATGGAGTCGCAGCTAATAGGAAATTTCTTGACCACCCTGGAGTTGTTGACCCTTCTCAAAGACCCGGTGGACCGCACCCGGGTTGTCTTCCTAGTAACAACAACGGTGAGCGCACACCTGCTGATCCTTACAATCTCCCCGACCAGAACTCCCGTGTTGCAGGACTTGCAGAGGCAGCAATTGCGAACATATGGTCACCTGGCGGAGGTCGATGGAAGTATTATCCGTGGAGCTGCCGCGGCGAAAACCCAAGGGACGGGCTGCTGGGGTTGACGGCGGCAGACTTGAGGGTCAGGGTGAGTGTGAGTGGCTTCGGGGGTCTGGTCAAAACAGCGAATAATGACCATGGTGCTGCGATGGGTCAAGGCGGAGGAGCAACCACCGTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

148

Amino Acids

15.34

Weight (kDa)

9.25

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19020 AT2G19030 AT2G19040 AT2G19045 AT3G25165 AT3G25170 AT3G25170 AT3G25170 AT4G13075
fragaria_vesca	FvH4_5g26840
prunus_persica	Prupe.8G194500_v2.0.a1 Prupe.8G194700_v2.0.a1 Prupe.8G194800_v2.0.a1
pyrus_communis	pycom11g21760
rosa_laevigata	RLG00000008545 RLG00000012780 RLG00000027995 RLG00000031333 RLG00000031335
rosa_multiflora	Rmu_sc0006935.1_g000004 Rmu_sc0015649.1_g000018 Rmu_sc0023017.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184990
rosa_rugosa	Rorug06G0159100
rosa_samantha	Rh4CG316900 Rh6DG267900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	178
AccII	CGCG	1 cut(s)	291
AciI	CCGC	6 cut(s)	125, 255, 289, 291, 329, 420
AclWI	GGATC	2 cut(s)	7, 170
AcsI	RAATTY	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	131, 257, 308, 438
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	88, 250
AluBI	AGCT	2 cut(s)	65, 285
AluI	AGCT	2 cut(s)	65, 285
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	7, 170
Ama87I	CYCGRG	1 cut(s)	130
ApeKI	GCWGC	5 cut(s)	62, 227, 285, 313, 404
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	3 cut(s)	117, 131, 132
AsuHPI	GGTGA	3 cut(s)	170, 240, 361
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	5 cut(s)	74, 239, 272, 300, 391
BccI	CCATC	2 cut(s)	258, 403
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	2 cut(s)	90, 252
BcnI	CCSGG	3 cut(s)	117, 131, 132
BfaI	CTAG	2 cut(s)	33, 144
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	8 cut(s)	63, 228, 286, 289, 292, 314, 330, 405
BlsI	GCNGC	8 cut(s)	64, 229, 287, 290, 293, 315, 331, 406
Bme1390I	CCNGG	5 cut(s)	90, 117, 131, 132, 252
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	5 cut(s)	90, 117, 131, 132, 252
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	3 cut(s)	117, 131, 132
BsaJI	CCNNGG	7 cut(s)	52, 88, 130, 278, 289, 302, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 257, 308, 438
BseBI	CCWGG	2 cut(s)	90, 252
BseDI	CCNNGG	7 cut(s)	52, 88, 130, 278, 289, 302, 397
BseLI	CCNNNNNNNGG	4 cut(s)	131, 257, 308, 438
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	74, 239, 272, 300, 391
BseYI	CCCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	117, 131
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	131, 257, 308, 438
BsmFI	GGGAC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	12, 175
Bsp19I	CCATGG	2 cut(s)	52, 397
BspACI	CCGC	6 cut(s)	125, 255, 289, 291, 329, 420
BspFNI	CGCG	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	7, 170
BssECI	CCNNGG	7 cut(s)	52, 88, 130, 278, 289, 302, 397
BssMI	GATC	2 cut(s)	12, 175
BssT1I	CCWWGG	3 cut(s)	52, 302, 397
Bst2UI	CCWGG	2 cut(s)	90, 252
Bst4CI	ACNGT	2 cut(s)	158, 436
BstAPI	GCANNNNNTGC	2 cut(s)	218, 233
BstDSI	CCRYGG	4 cut(s)	52, 278, 289, 397
BstEII	GGTNACC	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	15, 178
BstMBI	GATC	2 cut(s)	12, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 233, 291
BstNI	CCWGG	2 cut(s)	90, 252
BstPI	GGTNACC	1 cut(s)	246
BstSCI	CCNGG	5 cut(s)	88, 115, 129, 130, 250
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	74, 239, 272, 300, 391
BstV2I	GAAGAC	1 cut(s)	131
BtgI	CCRYGG	4 cut(s)	52, 278, 289, 397
BtgZI	GCGATG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	122
Cfr42I	CCGCGG	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	130
CviAII	CATG	3 cut(s)	37, 53, 398
CviJI	RGCY	4 cut(s)	65, 285, 313, 363
CviKI_1	RGCY	4 cut(s)	65, 285, 313, 363
DpnI	GATC	2 cut(s)	14, 177
DpnII	GATC	2 cut(s)	12, 175
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EciI	GGCGGA	2 cut(s)	270, 435
Eco130I	CCWWGG	3 cut(s)	52, 302, 397
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO65I	GGTNACC	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	88, 250
EcoT14I	CCWWGG	3 cut(s)	52, 302, 397
ErhI	CCWWGG	3 cut(s)	52, 302, 397
FaeI	CATG	3 cut(s)	40, 56, 401
FaiI	YATR	6 cut(s)	29, 38, 54, 242, 244, 399
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	36, 52, 397
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	8 cut(s)	63, 228, 286, 289, 292, 314, 330, 405
Fsp4HI	GCNGC	8 cut(s)	63, 228, 286, 289, 292, 314, 330, 405
FspBI	CTAG	2 cut(s)	33, 144
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	8 cut(s)	63, 228, 286, 289, 292, 314, 330, 405
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	2 cut(s)	117, 131
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	40, 56, 401
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	2 cut(s)	100, 324
HindII	GTYRAC	2 cut(s)	100, 324
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	117, 131
HphI	GGTGA	3 cut(s)	170, 240, 361
Hpy166II	GTNNAC	3 cut(s)	100, 122, 324
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	100, 122, 324
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	158, 436
HpyCH4V	TGCA	2 cut(s)	212, 221
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 233, 291
Hsp92II	CATG	3 cut(s)	40, 56, 401
HspAI	GCGC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	12, 175
LmnI	GCTCC	2 cut(s)	282, 425
Lsp1109I	GCAGC	5 cut(s)	74, 239, 272, 300, 391
MaeI	CTAG	2 cut(s)	33, 144
MaeIII	GTNAC	2 cut(s)	146, 246
MalI	GATC	2 cut(s)	14, 177
MboI	GATC	2 cut(s)	12, 175
MboII	GAAGA	1 cut(s)	131
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	74, 231
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	26, 217, 251, 333, 416
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	117, 131
MspR9I	CCNGG	5 cut(s)	90, 117, 131, 132, 252
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	90, 252
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 233, 291
NciI	CCSGG	3 cut(s)	117, 131, 132
NcoI	CCATGG	2 cut(s)	52, 397
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	2 cut(s)	12, 175
NlaIII	CATG	3 cut(s)	40, 56, 401
NmuCI	GTSAC	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	178
PkrI	GCNGC	8 cut(s)	64, 229, 287, 290, 293, 315, 331, 406
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	88, 250
PspEI	GGTNACC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	2 cut(s)	88, 250
PspPI	GGNCC	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	292
SatI	GCNGC	8 cut(s)	63, 228, 286, 289, 292, 314, 330, 405
Sau3AI	GATC	2 cut(s)	12, 175
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	5 cut(s)	90, 117, 131, 132, 252
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	67, 172, 253, 262, 287, 443
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	74, 231
SsiI	CCGC	6 cut(s)	125, 255, 289, 291, 329, 420
SspMI	CTAG	2 cut(s)	33, 144
StyD4I	CCNGG	5 cut(s)	88, 115, 129, 130, 250
StyI	CCWWGG	3 cut(s)	52, 302, 397
TaaI	ACNGT	2 cut(s)	158, 436
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	74, 231
TauI	GCSGC	3 cut(s)	291, 294, 332
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	5 cut(s)	62, 227, 285, 313, 404
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	267
TspMI	CCCGGG	1 cut(s)	130
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	33, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.