AT2G19680

mitochondrial ATP synthase g subunit family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002646
Physical Location & Seq
Forward (+)
8500946 .. 8502955
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19680.1

Sequence Viewer

Length: 369 bp
ATGGCATCAAAATTGGTTCAACTTCAATCAAAGGCATGTCAGGCTTCAAAGTTTGTGGCCAAGCATGGGAATTCGTACTACAAGCAATTGTTGGAGCAGAACAAGCAATACATCCAAGAGCCTGCAACTATAGAGAAGTGCAGTGAATTGTCTAAACAATTGCTCTACACTCGTCTTGCTAGCATTCCCGGGCGCTACGAAACATTTAGGAAAGAAGTAGACTACGCAAAGAACTTATTGAAGAACAGAGCGAATCTGAAGGTGGAAGATGCAGGAATCGCTGCATTGTTTGGCTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGAGGATTCACTTTCACCGGCTACTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

9.17

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 15 - 120 7.9e-22 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc16I TGCGCA 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 4 cut(s) 20, 26, 48, 241
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 2 cut(s) 195, 320
AsuC2I CCSGG 2 cut(s) 189, 190
AsuHPI GGTGA 2 cut(s) 335, 343
AsuNHI GCTAGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 188
BalI TGGCCA 1 cut(s) 59
BbvI GCAGC 1 cut(s) 268
BcnI CCSGG 2 cut(s) 189, 190
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 189, 190
BmeT110I CYCGRG 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 189, 190
BmsI GCATC 2 cut(s) 14, 259
BmtI GCTAGC 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 189, 190
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 189, 354
BslI CCNNNNNNNGG 1 cut(s) 66
BsmI GAATGC 2 cut(s) 183, 305
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 188
BspANI GGCC 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 311
BspOI GCTAGC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 123, 181
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 2 cut(s) 195, 320
BstMWI GCNNNNNNNGC 4 cut(s) 41, 103, 278, 300
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 187, 188
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 123, 181
CfoI GCGC 2 cut(s) 195, 320
Cfr10I RCCGGY 1 cut(s) 353
Cfr9I CCCGGG 1 cut(s) 188
Csp6I GTAC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 36, 65
CviJI RGCY 5 cut(s) 44, 59, 121, 294, 357
CviKI_1 RGCY 5 cut(s) 44, 59, 121, 294, 357
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 70
FaeI CATG 2 cut(s) 39, 68
FaiI YATR 3 cut(s) 37, 66, 131
FatI CATG 2 cut(s) 35, 64
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 180
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 2 cut(s) 194, 319
GluI GCNGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 189, 354
HhaI GCGC 2 cut(s) 195, 320
Hin1II CATG 2 cut(s) 39, 68
Hin6I GCGC 2 cut(s) 193, 318
HinP1I GCGC 2 cut(s) 193, 318
HinfI GANTC 3 cut(s) 253, 276, 342
HpaII CCGG 2 cut(s) 189, 354
HphI GGTGA 2 cut(s) 335, 343
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 253
HpyCH4V TGCA 4 cut(s) 125, 141, 272, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 103, 278, 300
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 2 cut(s) 39, 68
HspAI GCGC 2 cut(s) 193, 318
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 26, 135, 202, 258, 306
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 14, 259
MaeI CTAG 1 cut(s) 180
MboII GAAGA 2 cut(s) 253, 278
MfeI CAATTG 2 cut(s) 86, 158
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 5 cut(s) 11, 70, 86, 146, 158
MluNI TGGCCA 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 2 cut(s) 189, 354
MspR9I CCNGG 2 cut(s) 189, 190
MunI CAATTG 2 cut(s) 86, 158
Mva1269I GAATGC 2 cut(s) 183, 305
MwoI GCNNNNNNNGC 4 cut(s) 41, 103, 278, 300
NciI CCSGG 2 cut(s) 189, 190
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 2 cut(s) 39, 68
NsbI TGCGCA 1 cut(s) 319
NspI RCATGY 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 311
PctI GAATGC 2 cut(s) 183, 305
PfeI GAWTC 3 cut(s) 253, 276, 342
PkrI GCNGC 1 cut(s) 283
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 189, 190
SetI ASST 2 cut(s) 264, 325
SfaNI GCATC 2 cut(s) 14, 259
SfcI CTRYAG 1 cut(s) 129
SmaI CCCGGG 1 cut(s) 190
Sse9I AATT 5 cut(s) 11, 70, 86, 146, 158
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 187, 188
TasI AATT 5 cut(s) 11, 70, 86, 146, 158
TfiI GAWTC 3 cut(s) 253, 276, 342
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 281
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 39
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.