MD15G1203200.v1.1

Mitochondrial ATP synthase g subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002646
Physical Location & Seq
Reverse (-)
16144825 .. 16147431
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1203200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGCAAAGATTTGATTTGTTCTTGCGACTGATTTGGGGATCAATGGCATCGAAGTTGCGTCAGTTGCAATCTAAGGCTTGTCAAGCAACACAATTTGTGTCCCAACATGGAGGTACCTACTACAAGCAGTTGCTAGAGCAGAACAAGCAGTACATTCAGCACCCACCAACCGTGGAGAAGTGCAACGAGTTGTCCAAGCAATTGTTTTACACTCGACTTGCTAGTATTCCCGGTCGTACCGAGTCATTCTGGAAGGAAGTTGATTATGTCAAGCATTTGTGGAAGAACAGGAAGGAGTTGAAGGTTGAAGATGCTGGAATTGCTGCTTTGTTTGGGCTGGAATGCTTTGCATGGTTTTGTGCCGGTGAGATTGTTGGAAGGGGATTTACTTTCACCGGTTACCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

137

Amino Acids

15.86

Weight (kDa)

9.23

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 29 - 135 9.8e-23 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AclWI GGATC 1 cut(s) 46
AfaI GTAC 3 cut(s) 115, 152, 238
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 301, 308
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 323
AsiGI ACCGGT 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 377, 385
BanI GGYRCC 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BbvI GCAGC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 231
BfaI CTAG 2 cut(s) 134, 222
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 56, 301
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 395
Bse118I RCCGGY 2 cut(s) 362, 395
BseDI CCNNGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 231, 363, 396
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 347
Bsp143I GATC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 362, 395
BssAI RCCGGY 2 cut(s) 362, 395
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 398
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 64, 83, 145, 320
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 362, 395
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 114, 151, 237
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 3 cut(s) 107, 351, 404
CviJI RGCY 2 cut(s) 77, 337
CviKI_1 RGCY 2 cut(s) 77, 337
CviQI GTAC 3 cut(s) 114, 151, 237
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 398
FaeI CATG 3 cut(s) 110, 354, 407
FaiI YATR 4 cut(s) 108, 267, 352, 405
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 106, 350, 403
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 134, 222
GluI GCNGC 1 cut(s) 324
HapII CCGG 3 cut(s) 231, 363, 396
HgaI GACGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 110, 354, 407
HinfI GANTC 1 cut(s) 242
HpaII CCGG 3 cut(s) 231, 363, 396
HphI GGTGA 2 cut(s) 377, 385
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 247, 286, 295, 372
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 4, 67, 183, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 83, 145, 320
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 3 cut(s) 110, 354, 407
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 235, 244, 274, 300, 323, 376
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 56, 301
MaeI CTAG 2 cut(s) 134, 222
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 2 cut(s) 295, 320
MfeI CAATTG 1 cut(s) 200
MluCI AATT 3 cut(s) 92, 200, 318
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 1 cut(s) 104
MspI CCGG 3 cut(s) 231, 363, 396
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 347
MwoI GCNNNNNNNGC 4 cut(s) 64, 83, 145, 320
NciI CCSGG 1 cut(s) 231
NdeII GATC 1 cut(s) 38
NlaIII CATG 3 cut(s) 110, 354, 407
NlaIV GGNNCC 1 cut(s) 115
PctI GAATGC 1 cut(s) 347
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 115
PsrI GAACNNNNNNTAC 2 cut(s) 134, 166
RsaI GTAC 3 cut(s) 115, 152, 238
RsaNI GTAC 3 cut(s) 114, 151, 237
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 231
SetI ASST 3 cut(s) 115, 119, 306
SfaNI GCATC 2 cut(s) 56, 301
Sse9I AATT 3 cut(s) 92, 200, 318
SspMI CTAG 2 cut(s) 134, 222
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 50, 214
TasI AATT 3 cut(s) 92, 200, 318
TatI WGTACW 1 cut(s) 150
TseI GCWGC 1 cut(s) 323
XspI CTAG 2 cut(s) 134, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.