AT4G29480

mitochondrial ATP synthase g subunit family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002646
Physical Location & Seq
Reverse (-)
14485875 .. 14487804
1930 bp
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UTR
Exon/CDS
Intron
AT4G29480.1

Sequence Viewer

Length: 369 bp
ATGGCATCGAAGTTGATACAAGTTCAATCAAAGGCATGTGAGGCTTCAAAGTTTGTGGCTAAGCATGGAACTTCCTACTACAGACAGCTGTTGGAGAAGAACAAGCAGTATATCCAGGAACCTGCCACTGTTGAGAAGTGCCAAGAGTTGTCTAAGCAGTTGCTCTACACCCGTCTTGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACTACGCAAAGAACCTATGGAAGAACAGATCCGGTCTGAAGGTAGAAGATGCAGGAATCGCTGCATTGTTTGGTCTCGAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCTTCACAGGCTATTACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

122

Amino Acids

13.94

Weight (kDa)

9.02

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 16 - 120 3.1e-20 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc16I TGCGCA 1 cut(s) 319
Acc36I ACCTGC 2 cut(s) 130, 311
AccI GTMKAC 1 cut(s) 219
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 26, 48
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 335, 337
AsuNHI GCTAGC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 79
BfuAI ACCTGC 2 cut(s) 130, 311
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 116, 189
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 116, 189
BmsI GCATC 2 cut(s) 14, 259
BmtI GCTAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 332
BseBI CCWGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 189, 252, 333
BsmAI GTCTC 1 cut(s) 299
BsmI GAATGC 2 cut(s) 183, 305
Bso31I GGTCTC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 2 cut(s) 130, 311
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 181, 334
BstDEI CTNAG 2 cut(s) 60, 153
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 41, 278
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 114, 187
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 2 cut(s) 130, 311
Cac8I GCNNGC 2 cut(s) 181, 334
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 332
CseI GACGC 1 cut(s) 201
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 4 cut(s) 36, 65, 309, 366
CviJI RGCY 4 cut(s) 44, 59, 88, 357
CviKI_1 RGCY 4 cut(s) 44, 59, 88, 357
DdeI CTNAG 2 cut(s) 60, 153
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 39, 68, 312, 369
FaiI YATR 7 cut(s) 37, 66, 111, 198, 238, 310, 367
FatI CATG 4 cut(s) 35, 64, 308, 365
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 180
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 1 cut(s) 319
GluI GCNGC 1 cut(s) 282
HapII CCGG 3 cut(s) 189, 252, 333
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 320
Hin1II CATG 4 cut(s) 39, 68, 312, 369
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 2 cut(s) 276, 342
HpaII CCGG 3 cut(s) 189, 252, 333
HphI GGTGA 2 cut(s) 335, 337
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 208, 296
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 4 cut(s) 205, 214, 253, 358
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 272, 284, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 278
HpyF3I CTNAG 2 cut(s) 60, 153
Hsp92II CATG 4 cut(s) 39, 68, 312, 369
HspAI GCGC 1 cut(s) 318
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 248
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 14, 259
MaeI CTAG 1 cut(s) 180
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 3 cut(s) 109, 253, 278
MflI RGATCY 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 2 cut(s) 34, 332
MroNI GCCGGC 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 3 cut(s) 189, 252, 333
MspR9I CCNGG 2 cut(s) 116, 189
Mva1269I GAATGC 2 cut(s) 183, 305
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 41, 278
NaeI GCCGGC 1 cut(s) 334
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 248
NgoMIV GCCGGC 1 cut(s) 332
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 39, 68, 312, 369
NlaIV GGNNCC 1 cut(s) 120
NsbI TGCGCA 1 cut(s) 319
NspI RCATGY 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 311
PctI GAATGC 2 cut(s) 183, 305
PdiI GCCGGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 276, 342
PfoI TCCNGGA 2 cut(s) 114, 187
PkrI GCNGC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 88
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 116, 189
SetI ASST 7 cut(s) 90, 124, 206, 237, 264, 325, 350
SfaNI GCATC 2 cut(s) 14, 259
SfcI CTRYAG 1 cut(s) 79
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 114, 187
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 8, 297
TfiI GAWTC 2 cut(s) 276, 342
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 133
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.