Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Forward (+)

36065533 .. 36066593

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G414300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGGCCTCGAAGCTGGTTCAATTGCAAGGCAAGGCTACTCAAGCTTCAAAGGTTGCGGCTGAGTATGGATCTTCCTATTACAAGCAGCTTTTGGAGAAGAACAGGCATTACATTCAGGAGCCACCCACTGTTGAAAGATGCAACCTTTTGTCCAAACAGTTGTTTTATACCCGTCTTGCAAGTATACCGGGGCGCTATGAATTGTTGCGGAAGGAGGTTGATTCTGTCAAACAACTGTGGAAGAACAGGCAGGAGCTGAGGGTGGAAGATGCTGGGATTGCTGTCCTGTTTGGCTTAGAATGCTTTGCCTGGTTTTGTGCTGGTGAAATTGTAGGTCGGGGATTTAAATTCACTGGTTACCATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

124

Amino Acids

14.14

Weight (kDa)

9.32

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	2 cut(s)	59, 211
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	23, 51, 137
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	16, 47, 91, 259
AluI	AGCT	4 cut(s)	16, 47, 91, 259
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	2 cut(s)	60, 89
BlsI	GCNGC	2 cut(s)	61, 90
Bme1390I	CCNGG	2 cut(s)	192, 313
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	192, 313
BmsI	GCATC	2 cut(s)	131, 262
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	54, 251
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	2 cut(s)	59, 211
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	55, 252
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	71
BssNAI	GTATAC	1 cut(s)	188
Bst1107I	GTATAC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	133, 162, 240
BstDEI	CTNAG	3 cut(s)	63, 260, 298
BstEII	GGTNACC	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 281, 303
BstNI	CCWGG	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	190, 311
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	129, 354
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	198
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	9 cut(s)	8, 16, 38, 47, 62, 91, 124, 259, 297
CviKI_1	RGCY	9 cut(s)	8, 16, 38, 47, 62, 91, 124, 259, 297
DdeI	CTNAG	3 cut(s)	63, 260, 298
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DraI	TTTAAA	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	311
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	69, 171, 188, 201, 366
FatI	CATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	60, 89
Fsp4HI	GCNGC	2 cut(s)	60, 89
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	60, 89
GsaI	CCCAGC	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	133, 162, 240
HpyCH4V	TGCA	3 cut(s)	28, 144, 182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 281, 303
HpyF3I	CTNAG	3 cut(s)	63, 260, 298
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	121, 256
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	131, 262
MaeI	CTAG	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	4 cut(s)	66, 112, 256, 281
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	4 cut(s)	23, 203, 330, 350
MnlI	CCTC	3 cut(s)	19, 211, 255
MseI	TTAA	1 cut(s)	348
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	192, 313
MunI	CAATTG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	44, 281, 303
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	61, 90
Psp6I	CCWGG	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	123
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	60, 89
Sau3AI	GATC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	192, 313
SetI	ASST	8 cut(s)	18, 49, 57, 93, 150, 222, 261, 340
SfaNI	GCATC	2 cut(s)	131, 262
SmiI	ATTTAAAT	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	4 cut(s)	23, 203, 330, 350
SsiI	CCGC	2 cut(s)	59, 211
SspMI	CTAG	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	190, 311
SwaI	ATTTAAAT	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	133, 162, 240
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	23, 203, 330, 350
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	136, 361
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	136, 361
XapI	RAATTY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.