FvH4_1g06940

Mitochondrial ATP synthase g subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002646
Physical Location & Seq
Reverse (-)
3665002 .. 3667519
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06940.t1

Sequence Viewer

Length: 378 bp
ATGGCGGCGATGGCTTCAAAGTTGCGTCAGTTGCAGTCGAAGGCTTGCCAAGCGACTCAGTTTGTGTCAAAGCATGGAAATACCTACTACAAGGAAATGTTGGAGAAGAACAAGCAATACATTCAGGAGCCAGCAACTGTGGAGAAATGCAGCGAGCTGTCAAAGCAATTGTTTTACACCAGACTTGCTAGTCTTCCGGGTCGAAAAGAATCATTGCGGAAGGAACTTGATTATGTCAAGGGCATGTGGAAGAACAGGCAGGATTTGAAGGTTGAAGATGCTGGAATTGCTGCTTTGTTTGGGCTGGAATGCTTCTGCTGGTTTTGTGCTGGTGAGATTGCAGGAAGGGGATTCACTTTCACCGGTTACTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

126

Amino Acids

14.32

Weight (kDa)

9.1

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 18 - 123 1.5e-20 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 189
AciI CCGC 2 cut(s) 5, 217
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 3 cut(s) 18, 268, 275
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 150, 290
AsiGI ACCGGT 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 344, 352
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 162, 277
BccI CCATC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 189
BisI GCNGC 3 cut(s) 6, 151, 291
BlsI GCNGC 3 cut(s) 7, 152, 292
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 362
Bse118I RCCGGY 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 162, 277
BshTI ACCGGT 1 cut(s) 362
BsiSI CCGG 2 cut(s) 197, 363
BsmI GAATGC 1 cut(s) 314
BspACI CCGC 2 cut(s) 5, 217
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 46, 132, 155
BstDEI CTNAG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 11, 31, 50, 163, 287
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 162, 277
BstV2I GAAGAC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 23
Cac8I GCNNGC 3 cut(s) 46, 132, 155
CaiI CAGNNNCTG 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 362
CseI GACGC 1 cut(s) 14
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 2 cut(s) 74, 244
CviJI RGCY 5 cut(s) 14, 44, 130, 157, 304
CviKI_1 RGCY 5 cut(s) 14, 44, 130, 157, 304
DdeI CTNAG 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
FaeI CATG 2 cut(s) 77, 247
FaiI YATR 4 cut(s) 75, 234, 245, 372
FatI CATG 2 cut(s) 73, 243
Fnu4HI GCNGC 3 cut(s) 6, 151, 291
Fsp4HI GCNGC 3 cut(s) 6, 151, 291
FspBI CTAG 1 cut(s) 189
GluI GCNGC 3 cut(s) 6, 151, 291
HapII CCGG 2 cut(s) 197, 363
HgaI GACGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 77, 247
HinfI GANTC 3 cut(s) 55, 209, 351
HpaII CCGG 2 cut(s) 197, 363
HphI GGTGA 2 cut(s) 344, 352
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 34, 214, 262, 339
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 34, 150, 341
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 31, 50, 163, 287
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 77, 247
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 2 cut(s) 162, 277
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 4 cut(s) 118, 185, 262, 287
MfeI CAATTG 1 cut(s) 167
MluCI AATT 2 cut(s) 167, 285
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 81
MspI CCGG 2 cut(s) 197, 363
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 5 cut(s) 11, 31, 50, 163, 287
NciI CCSGG 1 cut(s) 198
NlaIII CATG 2 cut(s) 77, 247
NlaIV GGNNCC 1 cut(s) 129
NspI RCATGY 1 cut(s) 247
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 209, 351
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 3 cut(s) 7, 152, 292
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 129
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PstNI CAGNNNCTG 1 cut(s) 137
SatI GCNGC 3 cut(s) 6, 151, 291
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 198
SetI ASST 3 cut(s) 86, 159, 273
SfaNI GCATC 1 cut(s) 268
Sse9I AATT 2 cut(s) 167, 285
SsiI CCGC 2 cut(s) 5, 217
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 38, 202
TasI AATT 2 cut(s) 167, 285
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 209, 351
TseI GCWGC 2 cut(s) 150, 290
XceI RCATGY 1 cut(s) 247
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.