MD09G1195500.v1.1

ATP synthase g subunit family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002646
Physical Location & Seq
Forward (+)
17730057 .. 17731888
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1195500.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGTAGAGCAGAACAAGCACCATGTCCAGGAGCCCCCCACCATTGAGAAGTGCCAAACATTAGCAAAACAACTGTTCTATACTCGTCTTGCCAGTATTCCAGTTCGTTATGAAGCATTCTGGAAGGAAGTTGGCTATCTCAAGAATGCAATAAAAAGCAAGGAGGAGATGAACGTGGAGAATGCTGGCCTTGTTGCGCTCTTTGGAGTTGAATGCTTTGCCTGGTTCTGCGGCGGTGAGATCATAGGAAGGGGCTTTACATTCACCGGCTACTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

94

Amino Acids

10.67

Weight (kDa)

6.72

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 2 - 91 4e-19 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 231, 234
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 2 cut(s) 27, 221
AoxI GGCC 1 cut(s) 187
AspLEI GCGC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 248, 256
BanII GRGCYC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BciT130I CCWGG 2 cut(s) 29, 223
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 29, 223
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 29, 223
BpuEI CTTGAG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 93, 101
BseBI CCWGG 2 cut(s) 29, 223
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 93, 101
BseRI GAGGAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 4 cut(s) 116, 151, 187, 218
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 231, 234
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 2 cut(s) 93, 101
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 29, 223
Bst4CI ACNGT 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 187
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 29, 223
BstSCI CCNGG 2 cut(s) 27, 221
BsuRI GGCC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 266
CviAII CATG 1 cut(s) 23
CviJI RGCY 5 cut(s) 34, 135, 189, 255, 270
CviKI_1 RGCY 5 cut(s) 34, 135, 189, 255, 270
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 27, 221
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 1 cut(s) 26
FaiI YATR 5 cut(s) 24, 81, 111, 245, 276
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 232
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HpaII CCGG 1 cut(s) 267
HphI GGTGA 2 cut(s) 248, 256
Hpy188III TCNNGA 2 cut(s) 121, 142
HpyAV CCTTC 2 cut(s) 118, 243
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 14, 41, 106, 106, 114, 171, 208, 235
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 36
MnlI CCTC 1 cut(s) 157
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 29, 223
Mva1269I GAATGC 4 cut(s) 116, 151, 187, 218
MvaI CCWGG 2 cut(s) 29, 223
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 33
PctI GAATGC 4 cut(s) 116, 151, 187, 218
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 27, 221
PspGI CCWGG 2 cut(s) 27, 221
PspN4I GGNNCC 1 cut(s) 33
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 240
ScrFI CCNGG 2 cut(s) 29, 223
SduI GDGCHC 1 cut(s) 36
SetI ASST 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SsiI CCGC 2 cut(s) 231, 234
StyD4I CCNGG 2 cut(s) 27, 221
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 177
TauI GCSGC 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 126, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.