Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Forward (+)

9492406 .. 9493518

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGAAGCTGTCCAGATTTGATTGTCCTAGTTCAAGTATTTTTGTTTGGTGTGGGTTCGTATCCATGGCATCAAAGTTTCCACCAAAGCTGGTTCAGGCGTCGAACTTTTTAGTCAAGAATGGAGGTACGTATTACAAGCAGATGGTAGAGCAGAACAAGCACCATGTCCAGGAGCCCCCCACCATTGAGAAATGCCAAACATTAGCAAAACAACTGTTTTATACTCGTCTTGCCAGTATTCCAGTTCGTTATGAAGCATTCTGGAAGGAAGTTGGCTATCTCAAGAACGCAATAAAAAGCAAGGAGGAGATGAATGTGGAGAATGCTGGCCTTGCTGCTCTCTTTGGAGTTGAATGCTTTGCCTGGTTCTGTGGCGGTGAGATCATAGGAAGGGGCTTTACATTTACCGGCTACTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

8.97

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	36, 356
AjnI	CCWGG	2 cut(s)	171, 365
AluBI	AGCT	2 cut(s)	10, 91
AluI	AGCT	2 cut(s)	10, 91
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	173, 367
BciVI	GTATCC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	173, 367
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	173, 367
BmsI	GCATC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	237, 245
BseBI	CCWGG	2 cut(s)	173, 367
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	237, 245
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmI	GAATGC	3 cut(s)	260, 331, 362
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	237, 245
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	173, 367
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 335
BstNI	CCWGG	2 cut(s)	173, 367
BstSCI	CCNGG	2 cut(s)	171, 365
BstSNI	TACGTA	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	410
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	2 cut(s)	67, 167
CviJI	RGCY	7 cut(s)	10, 91, 178, 279, 333, 399, 414
CviKI_1	RGCY	7 cut(s)	10, 91, 178, 279, 333, 399, 414
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eco105I	TACGTA	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	171, 365
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 170
FaiI	YATR	6 cut(s)	68, 168, 225, 255, 389, 420
FatI	CATG	2 cut(s)	66, 166
Fnu4HI	GCNGC	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	70, 170
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	392
Hpy188III	TCNNGA	4 cut(s)	15, 118, 265, 286
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	262, 387
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 335
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	70, 170
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	131
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	119, 301
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	173, 367
Mva1269I	GAATGC	3 cut(s)	260, 331, 362
MvaI	CCWGG	2 cut(s)	173, 367
MwoI	GCNNNNNNNGC	2 cut(s)	160, 335
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	70, 170
NlaIV	GGNNCC	1 cut(s)	177
PctI	GAATGC	3 cut(s)	260, 331, 362
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	171, 365
PspGI	CCWGG	2 cut(s)	171, 365
PspN4I	GGNNCC	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	173, 367
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	12, 93, 130, 134
SfaNI	GCATC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	132
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	171, 365
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	104
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	270, 329
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.