Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Forward (+)

2406955 .. 2410377

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCGAGCTGCATCGATGCTGTGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCTTATTTGACATCGTGACCGTCCGATGCGGGCACTGTACCAATCTGTGGTCCGTGAACATGGCCGTTGCCTTTCAGTCACTGTCCTGGCAAGATGTCCAGGCACAAAACCAAAACGCACAGAATTACCGGATTGATTCGGGTTCATCATCCAAAGGCAACAAGAAGATTGCAACCAGAGACTCCATTGCAGTTCATCATGCCACTGAGGAAAAGGGTGTCAACCGACCTCCCGAGAAGAGGCAGCGCGTACCCTCTGCTTATAACCAGTTCATAAAGGAGGAGATTCAGAGGATCAAGGCCAATAACCCTGATATCAGCCATAGAGAAGCTTTCAGCACTGCTGCCAAAAATTGGGCGCACTTCCCTCATATTCATTTTGGGCTGATGTTGGAGACCAACAATCAGGCTAAGCTGGACAATGGCTCTGAGAAACATCTTCTGTCAAGGGCTGCACTACTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

8.7

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	8 - 64	5.2e-29	YABBY, N-terminal
YABBY	PF04690	100 - 159	7.6e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AccB7I	CCANNNNNTGG	2 cut(s)	141, 447
AccII	CGCG	2 cut(s)	74, 342
AciI	CCGC	2 cut(s)	74, 123
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	2 cut(s)	133, 345
AfiI	CCNNNNNNNGG	3 cut(s)	141, 333, 447
AjnI	CCWGG	2 cut(s)	179, 192
AluBI	AGCT	4 cut(s)	9, 96, 425, 508
AluI	AGCT	4 cut(s)	9, 96, 425, 508
Alw26I	GTCTC	2 cut(s)	267, 482
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	156, 393
ApeKI	GCWGC	6 cut(s)	9, 90, 93, 337, 437, 545
AspLEI	GCGC	2 cut(s)	342, 454
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	102, 105, 349, 424, 532
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	181, 194
BcoDI	GTCTC	2 cut(s)	267, 482
BisI	GCNGC	6 cut(s)	10, 91, 94, 338, 438, 546
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	6 cut(s)	11, 92, 95, 339, 439, 547
Bme1390I	CCNGG	2 cut(s)	181, 194
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	181, 194
BmsI	GCATC	3 cut(s)	7, 21, 110
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 333, 447
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	181, 194
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	2 cut(s)	42, 242
BseLI	CCNNNNNNNGG	3 cut(s)	141, 333, 447
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	18, 291, 513
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	102, 105, 349, 424, 532
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	74, 342
BshFI	GGCC	2 cut(s)	158, 395
BshVI	ATCGAT	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	141, 333, 447
BsmAI	GTCTC	2 cut(s)	267, 482
BsnI	GGCC	2 cut(s)	158, 395
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	387
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	2 cut(s)	74, 123
BspANI	GGCC	2 cut(s)	158, 395
BspCNI	CTCAG	3 cut(s)	19, 292, 514
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	2 cut(s)	74, 342
BspPI	GGATC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	181, 194
Bst4CI	ACNGT	3 cut(s)	115, 131, 177
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	4 cut(s)	27, 300, 504, 522
BstF5I	GGATG	2 cut(s)	42, 242
BstFNI	CGCG	2 cut(s)	74, 342
BstHHI	GCGC	2 cut(s)	342, 454
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	2 cut(s)	267, 482
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	181, 194
BstSCI	CCNGG	2 cut(s)	179, 192
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	2 cut(s)	74, 342
BstV1I	GCAGC	5 cut(s)	102, 105, 349, 424, 532
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	158, 395
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	42, 242
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	4 cut(s)	127, 173, 297, 432
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	342, 454
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	132, 344
CviAII	CATG	3 cut(s)	87, 154, 293
CviQI	GTAC	2 cut(s)	132, 344
DdeI	CTNAG	4 cut(s)	27, 300, 504, 522
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	179, 192
EcoRV	GATATC	1 cut(s)	409
FaeI	CATG	3 cut(s)	90, 157, 296
FaiI	YATR	7 cut(s)	88, 155, 294, 357, 368, 417, 465
FatI	CATG	3 cut(s)	86, 153, 292
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	6 cut(s)	10, 91, 94, 338, 438, 546
FokI	GGATG	2 cut(s)	29, 229
Fsp4HI	GCNGC	6 cut(s)	10, 91, 94, 338, 438, 546
GlaI	GCGC	2 cut(s)	341, 453
GluI	GCNGC	6 cut(s)	10, 91, 94, 338, 438, 546
HaeIII	GGCC	2 cut(s)	158, 395
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	2 cut(s)	342, 454
Hin1II	CATG	3 cut(s)	90, 157, 296
Hin6I	GCGC	2 cut(s)	340, 452
HinP1I	GCGC	2 cut(s)	340, 452
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	3 cut(s)	230, 275, 379
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	151, 316
Hpy188I	TCNGA	3 cut(s)	119, 384, 523
Hpy188III	TCNNGA	2 cut(s)	109, 326
Hpy8I	GTNNAC	2 cut(s)	151, 316
HpyCH4III	ACNGT	3 cut(s)	115, 131, 177
HpyCH4V	TGCA	7 cut(s)	12, 51, 60, 90, 266, 284, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	4 cut(s)	27, 300, 504, 522
Hsp92II	CATG	3 cut(s)	90, 157, 296
HspAI	GCGC	2 cut(s)	340, 452
Kzo9I	GATC	1 cut(s)	387
Lsp1109I	GCAGC	5 cut(s)	102, 105, 349, 424, 532
LweI	GCATC	3 cut(s)	7, 21, 110
MaeIII	GTNAC	2 cut(s)	109, 171
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	3 cut(s)	271, 343, 524
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	217, 445
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	295, 327, 333, 358, 367, 378, 471
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	181, 194
MvaI	CCWGG	2 cut(s)	181, 194
MvnI	CGCG	2 cut(s)	74, 342
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	90, 157, 296
NmuCI	GTSAC	2 cut(s)	109, 171
PfeI	GAWTC	2 cut(s)	230, 379
PflMI	CCANNNNNTGG	2 cut(s)	141, 447
PkrI	GCNGC	6 cut(s)	11, 92, 95, 339, 439, 547
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	179, 192
PspGI	CCWGG	2 cut(s)	179, 192
PspPI	GGNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	133, 345
RsaNI	GTAC	2 cut(s)	132, 344
SatI	GCNGC	6 cut(s)	10, 91, 94, 338, 438, 546
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	181, 194
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	5 cut(s)	11, 98, 325, 427, 510
SfaNI	GCATC	3 cut(s)	7, 21, 110
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	217, 445
SsiI	CCGC	2 cut(s)	74, 123
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	179, 192
TaaI	ACNGT	3 cut(s)	115, 131, 177
TaqI	TCGA	2 cut(s)	5, 15
TasI	AATT	2 cut(s)	217, 445
TfiI	GAWTC	2 cut(s)	230, 379
TscAI	CASTG	4 cut(s)	134, 180, 304, 439
TseFI	GTSAC	2 cut(s)	109, 171
TseI	GCWGC	6 cut(s)	9, 90, 93, 337, 437, 545
Tsp45I	GTSAC	2 cut(s)	109, 171
TspDTI	ATGAA	4 cut(s)	228, 278, 355, 458
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	4 cut(s)	134, 180, 304, 439
Van91I	CCANNNNNTGG	2 cut(s)	141, 447
VpaK11BI	GGWCC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.