Rw2G007040

Mitochondrial ATP synthase g subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002646
Physical Location & Seq
Forward (+)
6774370 .. 6776888
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007040.1

Sequence Viewer

Length: 378 bp
ATGGCCGCGATGGCATCAAAGTTGCGTCAGTTGCAGTCCAAGGCTTGCCAAGCGACTCAATTTGTGTCCAAGCATGGAACTACCTACTACAAACAGTTGTTAGAGCAGAACAAGCAATACATTCAGGAGCCGGCAACTGTGGAGAAATGCAGTGAGCTGTCAAAGCAATTGTTTTACACTCGACTTGCTAGTCTTCCGGGTCGGAATGAAGCACTGCGGAAGGAACTTGATTATGTCAAGAGTTTGTGGAAAAACAGGCAGGATTTGAAGGTTGAAGATGCTGGCATTGCTGCTTTGTTTGGGCTGGAGTGCTTCTGCTGGTTTTGTGTTGGTGAGATTGCAGGAAGGGGATTCACTATCACCGGTTACCATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

8.99

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 18 - 124 2.6e-22 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 189
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 6, 217
AcoI YGGCCR 1 cut(s) 3
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 268, 275
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 344, 352
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 2 cut(s) 6, 291
BlsI GCNGC 2 cut(s) 7, 292
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 23, 268
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 362
Bse118I RCCGGY 2 cut(s) 130, 362
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 362
BsiSI CCGG 3 cut(s) 131, 197, 363
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 6, 217
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 2 cut(s) 130, 362
BssAI RCCGGY 2 cut(s) 130, 362
BssECI CCNNGG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 96, 139
BstC8I GCNNGC 3 cut(s) 46, 132, 283
BstEII GGTNACC 1 cut(s) 365
BstFNI CGCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 6 cut(s) 11, 31, 50, 112, 163, 287
BstPI GGTNACC 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 23
BtsI GCAGTG 2 cut(s) 157, 212
BtsIMutI CAGTG 2 cut(s) 157, 212
Cac8I GCNNGC 3 cut(s) 46, 132, 283
Cfr10I RCCGGY 2 cut(s) 130, 362
CseI GACGC 1 cut(s) 14
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 2 cut(s) 74, 371
CviJI RGCY 5 cut(s) 5, 44, 130, 157, 304
CviKI_1 RGCY 5 cut(s) 5, 44, 130, 157, 304
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 77, 374
FaiI YATR 3 cut(s) 75, 234, 372
FatI CATG 2 cut(s) 73, 370
Fnu4HI GCNGC 2 cut(s) 6, 291
Fsp4HI GCNGC 2 cut(s) 6, 291
FspBI CTAG 1 cut(s) 189
GluI GCNGC 2 cut(s) 6, 291
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 131, 197, 363
HgaI GACGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 77, 374
HinfI GANTC 2 cut(s) 55, 351
HpaII CCGG 3 cut(s) 131, 197, 363
HphI GGTGA 2 cut(s) 344, 352
Hpy188I TCNGA 2 cut(s) 204, 377
Hpy188III TCNNGA 2 cut(s) 125, 238
HpyAV CCTTC 3 cut(s) 214, 262, 339
HpyCH4III ACNGT 2 cut(s) 96, 139
HpyCH4V TGCA 3 cut(s) 34, 150, 341
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 31, 50, 112, 163, 287
Hsp92II CATG 2 cut(s) 77, 374
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 110, 144, 210, 241, 245, 267, 290, 304, 327
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 23, 268
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 2 cut(s) 185, 287
MfeI CAATTG 1 cut(s) 167
MluCI AATT 2 cut(s) 59, 167
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 130
MspI CCGG 3 cut(s) 131, 197, 363
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 167
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 6 cut(s) 11, 31, 50, 112, 163, 287
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 77, 374
NlaIV GGNNCC 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 351
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 2 cut(s) 7, 292
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 129
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
SatI GCNGC 2 cut(s) 6, 291
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 198
SetI ASST 3 cut(s) 86, 159, 273
SfaNI GCATC 2 cut(s) 23, 268
Sse9I AATT 2 cut(s) 59, 167
SsiI CCGC 2 cut(s) 6, 217
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 96, 139
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 59, 167
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 351
TscAI CASTG 2 cut(s) 157, 219
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 2 cut(s) 157, 219
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.