MD08G1044300.v1.1

ATP synthase g subunit family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0002646
Physical Location & Seq
Forward (+)
3392971 .. 3393472
502 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1044300.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGCATCGAAGGTGTTTCTTCAGTTGCAAGGCAAGGCAACTCAAGCTTCAAGGGTTGTGTCAGAGTACGGATCTTCCTATTACAAGCAGGTATTGGAGAAGAACAGGCATTACGTTCAGGAGCCTCCCACTGCTGAAAAATGCAGCCTTTTGTCCAAACACTTGTTCTATACCCGTCTTGCTAGTATACCGGGGCGGTATGAAACATTTCAGAAGGAGCTTGATTCGGTCAAGCAAACGTGGAAGAACAGGCCGGCGCTGAGGGTGGAGGATGCCGGAATAGCTGCCCTGTTCGGCTTAGAATGCTTCGCCTGGTTTTGTGCCGGTGAGATGATAGGTCGAGGATTCACATTCACAGGTTACCGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

124

Amino Acids

14.03

Weight (kDa)

9.35

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 22 - 122 2.2e-19 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 187
AccII CGCG 1 cut(s) 366
AciI CCGC 2 cut(s) 196, 364
AclWI GGATC 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 47, 220, 284
AluI AGCT 3 cut(s) 47, 220, 284
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 144, 284
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 156, 271
BciT130I CCWGG 1 cut(s) 313
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 145, 285
BlsI GCNGC 2 cut(s) 146, 286
Bme1390I CCNGG 2 cut(s) 192, 313
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 192, 313
BmsI GCATC 2 cut(s) 14, 262
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 191
Bse118I RCCGGY 2 cut(s) 253, 323
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 156, 271
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 253
BsiSI CCGG 4 cut(s) 191, 254, 276, 324
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 2 cut(s) 196, 364
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 253, 323
BssAI RCCGGY 2 cut(s) 253, 323
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 71
BssNAI GTATAC 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 260, 298
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 44, 281, 303
BstNI CCWGG 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 190, 311
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 156, 271
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BstZ17I GTATAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 2 cut(s) 253, 323
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 7 cut(s) 47, 124, 147, 220, 253, 284, 297
CviKI_1 RGCY 7 cut(s) 47, 124, 147, 220, 253, 284, 297
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 260, 298
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 5
Eco91I GGTNACC 1 cut(s) 359
EcoO65I GGTNACC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 311
FaiI YATR 3 cut(s) 171, 188, 201
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 145, 285
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 145, 285
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 258
GluI GCNGC 2 cut(s) 145, 285
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 253
HapII CCGG 4 cut(s) 191, 254, 276, 324
HhaI GCGC 1 cut(s) 259
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 2 cut(s) 224, 345
HpaII CCGG 4 cut(s) 191, 254, 276, 324
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 64, 213
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 4, 208
HpyCH4IV ACGT 2 cut(s) 114, 239
HpyCH4V TGCA 2 cut(s) 28, 144
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 281, 303
HpyF3I CTNAG 2 cut(s) 260, 298
HpySE526I ACGT 2 cut(s) 114, 239
HspAI GCGC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 121, 217
Lsp1109I GCAGC 2 cut(s) 156, 271
LweI GCATC 2 cut(s) 14, 262
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 114, 239
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 4 cut(s) 11, 66, 112, 256
MflI RGATCY 1 cut(s) 71
MnlI CCTC 4 cut(s) 135, 255, 262, 335
MroNI GCCGGC 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 207
MspI CCGG 4 cut(s) 191, 254, 276, 324
MspR9I CCNGG 2 cut(s) 192, 313
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 44, 281, 303
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 71
NgoMIV GCCGGC 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 123
PctI GAATGC 1 cut(s) 308
PdiI GCCGGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 224, 345
PkrI GCNGC 2 cut(s) 146, 286
Psp6I CCWGG 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 123
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SatI GCNGC 2 cut(s) 145, 285
Sau3AI GATC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 192, 313
SetI ASST 9 cut(s) 15, 49, 93, 117, 222, 242, 286, 340, 361
SfaNI GCATC 2 cut(s) 14, 262
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
SsiI CCGC 2 cut(s) 196, 364
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 190, 311
TaiI ACGT 2 cut(s) 117, 242
TaqI TCGA 2 cut(s) 8, 340
TaqII GACCGA 1 cut(s) 217
TfiI GAWTC 2 cut(s) 224, 345
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 144, 284
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.