Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Forward (+)

3690083 .. 3693666

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G052200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTTTTCTTGGAGAAGTTTGTCTGTTTGAATTTCTGTAACCATTCAGATTTTATTGTTACCATTTGTTGCAATTGTTTTTGCATTCTCCTCAACGACTTGACGTGCACAAGCATGAACGCCTCATGTTCGTTTAGGGAGTCCATGGCTTCAAAGGTATCTTCATTGCAAAAGGTGGTTCAGGCATCGAACTTTCTAGTCAAGAATGGAAATATCTATTACAAGCAGTTGGTAGAGCAGAACAAGCACCATATCCAGGAGCCACCCACCATTGAGAAATGTCAAACATTAGCAAAACAACTGTTCTATACTCGTCTTGCCAGCATTCCGGGTCGTTATGAAGCATTCTGGAAGGAAGCTGACTCTCTCAAGAATGCACTAATAAACAGGCAGGAACTGAATGTGGAGAATGCTGGTCTTGCTGCTCTGTTTGGACTTGAGTGCTATGCCTGGTTCTGCGGTGGTGAGATTATAGGGAGGGGTTTCACATTTACAGGCTACTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

170

Amino Acids

19.24

Weight (kDa)

7.47

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	31, 153
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	255, 449
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	110
Alw44I	GTGCAC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	397
ApaLI	GTGCAC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	257, 451
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	3 cut(s)	257, 330, 451
BmgBI	CACGTC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	257, 330, 451
BmsI	GCATC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	353, 458
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	257, 451
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmI	GAATGC	5 cut(s)	84, 324, 344, 379, 415
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	257, 451
Bst4CI	ACNGT	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 419
BstNI	CCWGG	2 cut(s)	257, 451
BstSCI	CCNGG	3 cut(s)	255, 328, 449
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	397
CviAII	CATG	3 cut(s)	115, 126, 145
CviJI	RGCY	4 cut(s)	149, 262, 359, 498
CviKI_1	RGCY	4 cut(s)	149, 262, 359, 498
Eco130I	CCWWGG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	255, 449
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	118, 129, 148
FaiI	YATR	9 cut(s)	116, 127, 146, 252, 309, 339, 447, 473, 504
FatI	CATG	3 cut(s)	114, 125, 144
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	423
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	3 cut(s)	118, 129, 148
HinfI	GANTC	2 cut(s)	140, 362
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	202, 349, 370
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	72, 84, 108, 169, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 419
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	118, 129, 148
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	38, 58
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	2 cut(s)	149, 356
MnlI	CCTC	3 cut(s)	101, 133, 471
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	257, 330, 451
MunI	CAATTG	1 cut(s)	73
Mva1269I	GAATGC	5 cut(s)	84, 324, 344, 379, 415
MvaI	CCWGG	2 cut(s)	257, 451
MwoI	GCNNNNNNNGC	2 cut(s)	244, 419
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	144
NlaIII	CATG	3 cut(s)	118, 129, 148
NlaIV	GGNNCC	1 cut(s)	261
PctI	GAATGC	5 cut(s)	84, 324, 344, 379, 415
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	148, 356
PpsI	GAGTC	2 cut(s)	148, 356
Psp6I	CCWGG	2 cut(s)	255, 449
PspGI	CCWGG	2 cut(s)	255, 449
PspN4I	GGNNCC	1 cut(s)	261
PstNI	CAGNNNCTG	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	1 cut(s)	423
SchI	GAGTC	2 cut(s)	149, 356
ScrFI	CCNGG	3 cut(s)	257, 330, 451
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	4 cut(s)	107, 159, 177, 361
SfaNI	GCATC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	368, 437
SmoI	CTYRAG	2 cut(s)	368, 437
Sse9I	AATT	2 cut(s)	31, 73
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	255, 328, 449
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	31, 73
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	131, 153, 354
VneI	GTGCAC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.