Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Reverse (-)

29460 .. 29837

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggccgcgatggcatcaaagttacgtcagttgcagtccaaggcttgccaagcgactcaatttgtgtccaagcatggaactacctactacaaacagttgttagagcagaacaagcaatacattcaggagccggcaactgtggagaaatgcagtgagctgtcaaagcaattgttttacactcgacttgctagtcttccgggtcggaatgaagcactgcggaaggaacttgattatgtcaagagtttgtggaaaaacaggcaggatttgaaggttgaagatgctggcattgctgctttgtttgggctggagtgcttctgctggttttgtgttggtgagattgcaggaaggggattcactatcaccggttaccatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

8.99

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 217
AcoI	YGGCCR	1 cut(s)	3
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	268, 275
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	344, 352
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	6, 291
BlsI	GCNGC	2 cut(s)	7, 292
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	23, 268
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	362
Bse118I	RCCGGY	2 cut(s)	130, 362
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	131, 197, 363
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	6, 217
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	130, 362
BssAI	RCCGGY	2 cut(s)	130, 362
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	96, 139
BstC8I	GCNNGC	3 cut(s)	46, 132, 283
BstEII	GGTNACC	1 cut(s)	365
BstFNI	CGCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 50, 112, 163, 287
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	23
BtsI	GCAGTG	2 cut(s)	157, 212
BtsIMutI	CAGTG	2 cut(s)	157, 212
Cac8I	GCNNGC	3 cut(s)	46, 132, 283
Cfr10I	RCCGGY	2 cut(s)	130, 362
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	2 cut(s)	74, 371
CviJI	RGCY	5 cut(s)	5, 44, 130, 157, 304
CviKI_1	RGCY	5 cut(s)	5, 44, 130, 157, 304
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	77, 374
FaiI	YATR	3 cut(s)	75, 234, 372
FatI	CATG	2 cut(s)	73, 370
Fnu4HI	GCNGC	2 cut(s)	6, 291
Fsp4HI	GCNGC	2 cut(s)	6, 291
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	6, 291
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	131, 197, 363
Hin1II	CATG	2 cut(s)	77, 374
HinfI	GANTC	2 cut(s)	55, 351
HpaII	CCGG	3 cut(s)	131, 197, 363
HphI	GGTGA	2 cut(s)	344, 352
Hpy188I	TCNGA	2 cut(s)	204, 377
Hpy188III	TCNNGA	2 cut(s)	125, 238
HpyAV	CCTTC	3 cut(s)	214, 262, 339
HpyCH4III	ACNGT	2 cut(s)	96, 139
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	34, 150, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 50, 112, 163, 287
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	77, 374
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	9 cut(s)	110, 144, 210, 241, 245, 267, 290, 304, 327
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	23, 268
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	21, 365
MboII	GAAGA	2 cut(s)	185, 287
MfeI	CAATTG	1 cut(s)	167
MluCI	AATT	2 cut(s)	59, 167
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	130
MspI	CCGG	3 cut(s)	131, 197, 363
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	5 cut(s)	11, 50, 112, 163, 287
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	77, 374
NlaIV	GGNNCC	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	7, 292
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
SatI	GCNGC	2 cut(s)	6, 291
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	4 cut(s)	28, 86, 159, 273
SfaNI	GCATC	2 cut(s)	23, 268
Sse9I	AATT	2 cut(s)	59, 167
SsiI	CCGC	2 cut(s)	6, 217
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	96, 139
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	59, 167
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	2 cut(s)	157, 219
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	157, 219
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.