Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003262.1

Orthogroup ID

OG0002646

Physical Location & Seq

Genomic Coordinates Reverse (-)

65898 .. 69156

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003262.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgtactggcatggtcgatcagggacatcgccagctgactcatttttagggtttgaagctgtggagccaaacaacttttctctgaaggatattacactcccttggaatgaacaaaacaatatggatcttcttctttatcagagtcatcattatgatggttcctcaatcgtcccctcgcaagagcttcgcactctctctctcttcggctttgaattcgattccgacgaaggattgacccgggcatcgatggccgcgatggcatcaaagttgcgtcagttgcagtccaaggcttgccaagcgactcaatttgtgtccaagcatggaactacctactacaaacagttgttagagcagaacaagcaatacattcaggagccggcaactgtggagaaatgcagtgagctgtcaaagcaattgttttacactcgacttgctagtcttccgggtcggaatgaagcactgcggaaggaacttgattatgtcaagagtttgtggaaaaacaggcaggatttgaaggttgaagatgctggcattgctgctttgtttgggctggagtgcttctgctggttttgtgttggtgagattgcaggaaggggattcactatcaccggttaccatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_G

Protein Analysis

207

Amino Acids

23.53

Weight (kDa)

5.97

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19680 AT2G19680 AT4G26210 AT4G26210 AT4G29480
fragaria_vesca	FvH4_1g06940 FvH4_6g33000 FvH4_6g33000
malus_domestica	MD02G1073700.v1.1 MD08G1044300.v1.1 MD09G1195500.v1.1 MD15G1203200.v1.1
prunus_persica	Prupe.1G414300_v2.0.a1 Prupe.1G414300_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.3G052200_v2.0.a1 Prupe.7G214000_v2.0.a1
pyrus_communis	pycom09g11270 pycom15g18040
rosa_chinensis	RchiOBHm_Chr2g0092881 RchiOBHm_Chr2g0142551
rosa_laevigata	RLG00000019966
rosa_multiflora	Rmu_sc0000482.1_g000001 Rmu_sc0003262.1_g000021 Rmu_ssc0000218.1_g000008
rosa_roxburghii	Rroxscaffold_2G00102530 Rroxscaffold_2G00148750
rosa_rugosa	Rorug02G0029900 Rorug02G0373800
rosa_samantha	Rh2AG075600 Rh2AG425200 Rh2BG077000 Rh2BG435100 Rh2CG079300 Rh2CG411900 Rh2DG074300 Rh2DG445100
rosa_wichuraiana	Rw2G007040 Rw2G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	435
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	252, 463
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	5
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	56, 212, 514, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	4 cut(s)	35, 59, 184, 403
AluI	AGCT	4 cut(s)	35, 59, 184, 403
AlwI	GGATC	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	608
AsuC2I	CCSGG	3 cut(s)	238, 239, 444
AsuHPI	GGTGA	2 cut(s)	590, 598
AvaI	CYCGRG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	149, 241, 250
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcnI	CCSGG	3 cut(s)	238, 239, 444
BfaI	CTAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	252, 537
BlsI	GCNGC	2 cut(s)	253, 538
Bme1390I	CCNGG	3 cut(s)	238, 239, 444
BmeT110I	CYCGRG	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	66, 160, 375
BmrFI	CCNGG	3 cut(s)	238, 239, 444
BmsI	GCATC	3 cut(s)	251, 269, 514
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	3 cut(s)	238, 239, 444
Bsa29I	ATCGAT	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	101, 237, 285
BsaWI	WCCGGW	1 cut(s)	608
Bse118I	RCCGGY	2 cut(s)	376, 608
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	101, 237, 285
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	608
BshVI	ATCGAT	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	4 cut(s)	238, 377, 443, 609
BslFI	GGGAC	2 cut(s)	37, 155
BsmFI	GGGAC	2 cut(s)	37, 155
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	17, 124
BspACI	CCGC	2 cut(s)	252, 463
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	66, 160, 375
BspPI	GGATC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	2 cut(s)	376, 608
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	376, 608
BssECI	CCNNGG	3 cut(s)	101, 237, 285
BssMI	GATC	2 cut(s)	17, 124
BssT1I	CCWWGG	2 cut(s)	101, 285
Bst4CI	ACNGT	2 cut(s)	342, 385
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	33, 292, 378, 529
BstEII	GGTNACC	1 cut(s)	611
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	20, 127
BstMBI	GATC	2 cut(s)	17, 124
BstMWI	GCNNNNNNNGC	7 cut(s)	248, 257, 277, 296, 358, 409, 533
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	236, 237, 442
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	245
BtgZI	GCGATG	2 cut(s)	12, 269
BtsI	GCAGTG	2 cut(s)	403, 458
BtsIMutI	CAGTG	2 cut(s)	403, 458
Cac8I	GCNNGC	4 cut(s)	33, 292, 378, 529
Cfr10I	RCCGGY	2 cut(s)	376, 608
Cfr9I	CCCGGG	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	245
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	3 cut(s)	11, 320, 617
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	19, 126
DpnII	GATC	2 cut(s)	17, 124
DrdI	GACNNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	101, 285
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	101, 285
ErhI	CCWWGG	2 cut(s)	101, 285
FaeI	CATG	3 cut(s)	14, 323, 620
FaiI	YATR	6 cut(s)	12, 122, 153, 321, 480, 618
FaqI	GGGAC	2 cut(s)	37, 155
FatI	CATG	3 cut(s)	10, 319, 616
Fnu4HI	GCNGC	2 cut(s)	252, 537
Fsp4HI	GCNGC	2 cut(s)	252, 537
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	252, 537
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	4 cut(s)	238, 377, 443, 609
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	14, 323, 620
HinfI	GANTC	5 cut(s)	38, 142, 218, 301, 597
HpaII	CCGG	4 cut(s)	238, 377, 443, 609
HphI	GGTGA	2 cut(s)	590, 598
Hpy188I	TCNGA	5 cut(s)	84, 141, 223, 450, 623
Hpy188III	TCNNGA	2 cut(s)	371, 484
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	79, 221, 460, 508, 585
HpyCH4III	ACNGT	2 cut(s)	342, 385
HpyCH4V	TGCA	3 cut(s)	280, 396, 587
HpyF10VI	GCNNNNNNNGC	7 cut(s)	248, 257, 277, 296, 358, 409, 533
Hsp92II	CATG	3 cut(s)	14, 323, 620
KroI	GCCGGC	1 cut(s)	376
KroNI	GCCGGC	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	17, 124
LmnI	GCTCC	2 cut(s)	64, 373
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	3 cut(s)	251, 269, 514
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	2 cut(s)	19, 126
MboI	GATC	2 cut(s)	17, 124
MboII	GAAGA	5 cut(s)	119, 122, 193, 431, 533
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	3 cut(s)	212, 305, 413
MlyI	GAGTC	3 cut(s)	32, 151, 295
MmeI	TCCRAC	2 cut(s)	246, 428
MnlI	CCTC	2 cut(s)	172, 184
MroNI	GCCGGC	1 cut(s)	376
MslI	CAYNNNNRTG	2 cut(s)	150, 153
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	4 cut(s)	238, 377, 443, 609
MspR9I	CCNGG	3 cut(s)	238, 239, 444
MunI	CAATTG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	7 cut(s)	248, 257, 277, 296, 358, 409, 533
NaeI	GCCGGC	1 cut(s)	378
NciI	CCSGG	3 cut(s)	238, 239, 444
NdeII	GATC	2 cut(s)	17, 124
NgoMIV	GCCGGC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	14, 323, 620
NlaIV	GGNNCC	3 cut(s)	66, 160, 375
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 251
PdiI	GCCGGC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	218, 597
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	253, 538
PleI	GAGTC	3 cut(s)	32, 150, 295
PpsI	GAGTC	3 cut(s)	32, 150, 295
PspEI	GGTNACC	1 cut(s)	611
PspN4I	GGNNCC	3 cut(s)	66, 160, 375
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PsuI	RGATCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	150, 153
SatI	GCNGC	2 cut(s)	252, 537
Sau3AI	GATC	2 cut(s)	17, 124
SchI	GAGTC	3 cut(s)	32, 151, 295
ScrFI	CCNGG	3 cut(s)	238, 239, 444
SetI	ASST	6 cut(s)	37, 61, 186, 332, 405, 519
SfaNI	GCATC	3 cut(s)	251, 269, 514
SmaI	CCCGGG	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	150, 153
Sse9I	AATT	3 cut(s)	212, 305, 413
SsiI	CCGC	2 cut(s)	252, 463
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	236, 237, 442
StyI	CCWWGG	2 cut(s)	101, 285
TaaI	ACNGT	2 cut(s)	342, 385
TaqI	TCGA	4 cut(s)	16, 216, 245, 427
TasI	AATT	3 cut(s)	212, 305, 413
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	218, 597
TscAI	CASTG	2 cut(s)	403, 465
TseI	GCWGC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	123, 468
TspMI	CCCGGG	1 cut(s)	237
TspRI	CASTG	2 cut(s)	403, 465
XapI	RAATTY	1 cut(s)	212
XmaI	CCCGGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.