MD02G1073700.v1.1

ATP synthase g subunit family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002646
Physical Location & Seq
Reverse (-)
5919405 .. 5921656
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1073700.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGGATTGATTTGGGCATCAATGGCATCGAAGTTGCGTCAGTTGCAATCTAAGGCTAGTCAAGCAACACAATTGGTGTCCAAGTATGGAAGTACCTACTACAAGCAGTTGTTAGAGGAGAATAAGCAGTACATTCAACACCCACCAACCGTGGAGAAGTGCAATGAGTTGTCCAAGCAATTGCTTTACACTCGACTTGCTAGTATTCCTGGTCGTACTGAGTCATTCTGGAAGGAAGTTGATTACGTCAAGCATTTGTGGAAGAACAGGAAGGAGGTGAAGGTTGAAGATGCTGGAATTGCTGCTTTGTTTGGGCTGGAGTGCTTTGCATGGTTTTGTGCAGGTGAGATCGTGGGAAGGGGATTTACTTTCACCGGCTACTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

9.11

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 23 - 127 1e-21 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
AfaI GTAC 3 cut(s) 94, 131, 217
AgsI TTSAA 2 cut(s) 137, 287
AjnI CCWGG 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 289, 356, 364
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BbvI GCAGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 2 cut(s) 57, 201
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 26, 35, 280
BpmI CTGGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 375
Bsp143I GATC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 51, 219
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 4 cut(s) 23, 43, 62, 299
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 374
CseI GACGC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 93, 130, 216
CviAII CATG 1 cut(s) 330
CviJI RGCY 3 cut(s) 56, 316, 378
CviKI_1 RGCY 3 cut(s) 56, 316, 378
CviQI GTAC 3 cut(s) 93, 130, 216
DdeI CTNAG 2 cut(s) 51, 219
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 333
FaiI YATR 3 cut(s) 87, 331, 384
FatI CATG 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 57, 201
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 338
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 333
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 375
HphI GGTGA 3 cut(s) 289, 356, 364
Hpy188III TCNNGA 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 226, 265, 274, 351
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 46, 162, 329, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 43, 62, 299
HpyF3I CTNAG 2 cut(s) 51, 219
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 333
Kzo9I GATC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 195, 214, 222, 253, 279, 302, 327
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 26, 35, 280
MaeI CTAG 2 cut(s) 57, 201
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 2 cut(s) 274, 299
MfeI CAATTG 2 cut(s) 71, 179
MluCI AATT 3 cut(s) 71, 179, 297
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 109, 268
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 2 cut(s) 71, 179
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 4 cut(s) 23, 43, 62, 299
NdeII GATC 1 cut(s) 348
NlaIII CATG 1 cut(s) 333
PaqCI CACCTGC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
RsaI GTAC 3 cut(s) 94, 131, 217
RsaNI GTAC 3 cut(s) 93, 130, 216
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 348
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 210
SetI ASST 5 cut(s) 98, 249, 279, 285, 346
SfaNI GCATC 3 cut(s) 26, 35, 280
Sse9I AATT 3 cut(s) 71, 179, 297
SspMI CTAG 2 cut(s) 57, 201
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 29, 193
TasI AATT 3 cut(s) 71, 179, 297
TatI WGTACW 1 cut(s) 129
TseI GCWGC 1 cut(s) 302
XspI CTAG 2 cut(s) 57, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.