AT2G20670

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003387
Physical Location & Seq
Reverse (-)
8911860 .. 8913747
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20670.1

Sequence Viewer

Length: 885 bp
ATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGCTAGCTCCGACGACGTTCTTTTCGGTTTTCTTGACGAAGGAAACCAGTCACCGGAAGATTTCTCCGTAAACCTCAACGCCGGCGAAGATGACGGTGACGAAGACGACAATAATAACAATTCTGAAGATAACAAAGCTTTTTGGCAGGAACACGAACAACTTCTTCAGGGGACACTGTATAGGACAAGTTCCATTGAGACAAAGATTAGACAAGCTACAAAAGAAGCGTTGAAACAAGTTAAATCTAAGGGTCTTTATTGTGTTTGCCGGCGACCAGTGGACGGCGGTTGCCGGAGTTGCTTACGTGGCGAAATCTCTAGACACCTAAGAGATGTCGCCGGCTACGATTGCGTCATCTCTAAATCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAATTTATAGAGATTGTGGACCGATCGGGTTCAAAGAAAAGCGAGATGCGAGTGGTGATTGAGTTATCATTTAGGGCAGAGTTTGAGATTGCAAAAGGCAGTGAAGAGTACAAAAGACTTATCAGTCGATTGCCTGAGGTTTACGTCGGGAAAACCGAGAGGCTTCGATCTCTGATAAAGATATTGTGCATAGCGGGAAAGAAATGCTTGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAAGTACATGCAAGCCAAGTGGCTTGGCACATGTGATCGATCTAGCTCCTTGGAAGCTTCGGTTTCCGAGGCCATGGAGCCAGAAAATTGGGTGCCGGTGGCGAAGCCTAGGGTTTCTATGTTGAACTATGATGGTCTCTTAGGTGGTTTCTCTGCCGGTCCGGCCACTGTAGCGGTCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

294

Amino Acids

33.2

Weight (kDa)

6.05

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 21 - 247 3.7e-73 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 793
AciI CCGC 3 cut(s) 333, 647, 875
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 2 cut(s) 13, 455
AcuI CTGAAG 2 cut(s) 192, 197
AfaI GTAC 2 cut(s) 563, 707
AfiI CCNNNNNNNGG 3 cut(s) 100, 329, 445
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 280, 486, 826
AluBI AGCT 5 cut(s) 54, 185, 263, 747, 758
AluI AGCT 5 cut(s) 54, 185, 263, 747, 758
Alw26I GTCTC 3 cut(s) 239, 660, 842
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 771, 864
ApoI RAATTY 2 cut(s) 13, 455
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 207
AspA2I CCTAGG 1 cut(s) 809
AspS9I GGNCC 2 cut(s) 472, 860
AsuHPI GGTGA 3 cut(s) 90, 155, 520
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 2 cut(s) 472, 860
AvrII CCTAGG 1 cut(s) 809
AxyI CCTNAGG 1 cut(s) 588
BanI GGYRCC 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 156
BccI CCATC 2 cut(s) 35, 827
BceAI ACGGC 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 239, 660, 842
BfaI CTAG 4 cut(s) 51, 366, 744, 810
BfmI CTRYAG 2 cut(s) 441, 870
BglI GCCNNNNNGGC 1 cut(s) 863
BlnI CCTAGG 1 cut(s) 809
Bme18I GGWCC 2 cut(s) 472, 860
BmgT120I GGNCC 2 cut(s) 472, 860
BmiI GGNNCC 3 cut(s) 687, 780, 795
BmsI GCATC 1 cut(s) 489
BmtI GCTAGC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 682
Bsa29I ATCGAT 1 cut(s) 739
BsaAI YACGTR 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 5 cut(s) 689, 750, 768, 774, 809
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 329, 445
Bse118I RCCGGY 5 cut(s) 128, 315, 386, 796, 857
Bse1I ACTGG 2 cut(s) 94, 323
Bse21I CCTNAGG 1 cut(s) 588
BseCI ATCGAT 1 cut(s) 739
BseDI CCNNGG 5 cut(s) 689, 750, 768, 774, 809
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 100, 329, 445
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 94, 323
Bsh1285I CGRYCG 2 cut(s) 479, 879
BshFI GGCC 2 cut(s) 773, 866
BshNI GGYRCC 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 739
BsiEI CGRYCG 2 cut(s) 479, 879
BsiSI CCGG 8 cut(s) 101, 129, 316, 340, 387, 797, 858, 863
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 100, 329, 445
BsmAI GTCTC 3 cut(s) 239, 660, 842
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 773, 866
Bso31I GGTCTC 1 cut(s) 842
Bsp143I GATC 5 cut(s) 4, 476, 620, 736, 740
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 3 cut(s) 333, 647, 875
BspANI GGCC 2 cut(s) 773, 866
BspCNI CTCAG 1 cut(s) 580
BspDI ATCGAT 1 cut(s) 739
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 687, 780, 795
BspMAI CTGCAG 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 842
BsrFI RCCGGY 5 cut(s) 128, 315, 386, 796, 857
BsrI ACTGG 2 cut(s) 94, 323
BssAI RCCGGY 5 cut(s) 128, 315, 386, 796, 857
BssECI CCNNGG 5 cut(s) 689, 750, 768, 774, 809
BssMI GATC 5 cut(s) 4, 476, 620, 736, 740
BssT1I CCWWGG 4 cut(s) 689, 750, 774, 809
Bst4CI ACNGT 3 cut(s) 143, 225, 871
Bst6I CTCTTC 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 5 cut(s) 52, 130, 317, 388, 714
BstDEI CTNAG 4 cut(s) 294, 374, 588, 841
BstDSI CCRYGG 1 cut(s) 774
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 5 cut(s) 7, 479, 623, 739, 743
BstMAI GTCTC 3 cut(s) 239, 660, 842
BstMBI GATC 5 cut(s) 4, 476, 620, 736, 740
BstMCI CGRYCG 2 cut(s) 479, 879
BstMWI GCNNNNNNNGC 5 cut(s) 345, 354, 396, 863, 872
BstNSI RCATGY 2 cut(s) 712, 735
BstSFI CTRYAG 2 cut(s) 441, 870
BstV2I GAAGAC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 789
Bsu15I ATCGAT 1 cut(s) 739
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 2 cut(s) 773, 866
BsuTUI ATCGAT 1 cut(s) 739
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 4 cut(s) 221, 330, 559, 867
Cac8I GCNNGC 5 cut(s) 52, 130, 317, 388, 714
CciI TCATGA 1 cut(s) 27
Cfr10I RCCGGY 5 cut(s) 128, 315, 386, 796, 857
Cfr13I GGNCC 2 cut(s) 472, 860
ClaI ATCGAT 1 cut(s) 739
CpoI CGGWCCG 1 cut(s) 860
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 562, 706
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CspI CGGWCCG 1 cut(s) 860
CviAII CATG 4 cut(s) 28, 709, 732, 775
CviQI GTAC 2 cut(s) 562, 706
DdeI CTNAG 4 cut(s) 294, 374, 588, 841
DpnI GATC 5 cut(s) 6, 478, 622, 738, 742
DpnII GATC 5 cut(s) 4, 476, 620, 736, 740
DrdI GACNNNNNNGTC 1 cut(s) 576
DseDI GACNNNNNNGTC 1 cut(s) 576
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 4 cut(s) 689, 750, 774, 809
Eco31I GGTCTC 1 cut(s) 842
Eco47I GGWCC 2 cut(s) 472, 860
Eco57I CTGAAG 2 cut(s) 192, 197
Eco81I CCTNAGG 1 cut(s) 588
EcoT14I CCWWGG 4 cut(s) 689, 750, 774, 809
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 4 cut(s) 689, 750, 774, 809
FaeI CATG 4 cut(s) 31, 712, 735, 778
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 232
FatI CATG 4 cut(s) 27, 708, 731, 774
FauI CCCGC 1 cut(s) 640
FauNDI CATATG 1 cut(s) 681
FokI GGATG 1 cut(s) 422
FspBI CTAG 4 cut(s) 51, 366, 744, 810
HaeIII GGCC 2 cut(s) 773, 866
HapII CCGG 8 cut(s) 101, 129, 316, 340, 387, 797, 858, 863
HgaI GACGC 1 cut(s) 388
Hin1II CATG 4 cut(s) 31, 712, 735, 778
HindIII AAGCTT 2 cut(s) 183, 756
HpaII CCGG 8 cut(s) 101, 129, 316, 340, 387, 797, 858, 863
HphI GGTGA 3 cut(s) 90, 155, 520
Hpy166II GTNNAC 4 cut(s) 118, 328, 472, 595
Hpy188I TCNGA 5 cut(s) 19, 58, 172, 627, 769
Hpy188III TCNNGA 6 cut(s) 28, 38, 80, 366, 431, 601
Hpy8I GTNNAC 4 cut(s) 118, 328, 472, 595
Hpy99I CGWCG 3 cut(s) 62, 65, 602
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 3 cut(s) 143, 225, 871
HpyCH4IV ACGT 3 cut(s) 63, 352, 597
HpyCH4V TGCA 5 cut(s) 443, 545, 642, 679, 712
HpyF10VI GCNNNNNNNGC 5 cut(s) 345, 354, 396, 863, 872
HpyF3I CTNAG 4 cut(s) 294, 374, 588, 841
HpySE526I ACGT 3 cut(s) 63, 352, 597
Hsp92II CATG 4 cut(s) 31, 712, 735, 778
KroI GCCGGC 3 cut(s) 128, 315, 386
KroNI GCCGGC 3 cut(s) 130, 317, 388
Kzo9I GATC 5 cut(s) 4, 476, 620, 736, 740
LmnI GCTCC 4 cut(s) 59, 691, 752, 778
LweI GCATC 1 cut(s) 489
MaeI CTAG 4 cut(s) 51, 366, 744, 810
MaeII ACGT 3 cut(s) 63, 352, 597
MaeIII GTNAC 2 cut(s) 96, 143
MalI GATC 5 cut(s) 6, 478, 622, 738, 742
MboI GATC 5 cut(s) 4, 476, 620, 736, 740
MboII GAAGA 6 cut(s) 116, 146, 161, 185, 203, 569
MluCI AATT 4 cut(s) 13, 166, 455, 787
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 131, 583, 606, 763
Mph1103I ATGCAT 1 cut(s) 681
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 3 cut(s) 128, 315, 386
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 288
MspI CCGG 8 cut(s) 101, 129, 316, 340, 387, 797, 858, 863
MwoI GCNNNNNNNGC 5 cut(s) 345, 354, 396, 863, 872
NaeI GCCGGC 3 cut(s) 130, 317, 388
NcoI CCATGG 1 cut(s) 774
NdeI CATATG 1 cut(s) 681
NdeII GATC 5 cut(s) 4, 476, 620, 736, 740
NgoMIV GCCGGC 3 cut(s) 128, 315, 386
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 4 cut(s) 31, 712, 735, 778
NlaIV GGNNCC 3 cut(s) 687, 780, 795
NmuCI GTSAC 2 cut(s) 96, 143
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 2 cut(s) 712, 735
PagI TCATGA 1 cut(s) 27
PciI ACATGT 1 cut(s) 731
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 606
PdiI GCCGGC 3 cut(s) 130, 317, 388
PdmI GAANNNNTTC 1 cut(s) 207
Ple19I CGATCG 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 353
PscI ACATGT 1 cut(s) 731
PspN4I GGNNCC 3 cut(s) 687, 780, 795
PspPI GGNCC 2 cut(s) 472, 860
PstI CTGCAG 1 cut(s) 445
PvuI CGATCG 1 cut(s) 479
RsaI GTAC 2 cut(s) 563, 707
RsaNI GTAC 2 cut(s) 562, 706
Rsr2I CGGWCCG 1 cut(s) 860
RsrII CGGWCCG 1 cut(s) 860
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 5 cut(s) 4, 476, 620, 736, 740
Sau96I GGNCC 2 cut(s) 472, 860
SbfI CCTGCAGG 1 cut(s) 445
SdaI CCTGCAGG 1 cut(s) 445
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 2 cut(s) 441, 870
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 472, 860
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse8387I CCTGCAGG 1 cut(s) 445
Sse9I AATT 4 cut(s) 13, 166, 455, 787
SsiI CCGC 3 cut(s) 333, 647, 875
SspMI CTAG 4 cut(s) 51, 366, 744, 810
StyI CCWWGG 4 cut(s) 689, 750, 774, 809
TaaI ACNGT 3 cut(s) 143, 225, 871
TaiI ACGT 3 cut(s) 66, 355, 600
TaqI TCGA 4 cut(s) 39, 580, 619, 739
TaqII GACCGA 1 cut(s) 489
TasI AATT 4 cut(s) 13, 166, 455, 787
TatI WGTACW 2 cut(s) 561, 705
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 4 cut(s) 228, 330, 559, 874
TseFI GTSAC 2 cut(s) 96, 143
Tsp45I GTSAC 2 cut(s) 96, 143
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 4 cut(s) 228, 330, 559, 874
VpaK11BI GGWCC 2 cut(s) 472, 860
XapI RAATTY 2 cut(s) 13, 455
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 2 cut(s) 712, 735
XmaJI CCTAGG 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 4 cut(s) 51, 366, 744, 810
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.