Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Reverse (-)

16643035 .. 16644504

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCGCAGCGATGGTTACAATACCTGTGATTCTCCGGAGTTCCGACGATATGTTTGAATTTCCCGGTACAGGTGTAAGTCTCGGGGACATGGTTCTGGATTTCATCGAGGAAGTCGAGGTGTCGACGGAGTTTAATACTACCTCTGGCTCCGACGAAGACGACGAGAATTCTTGCAGTGTGGAAGAGAACAAGGCATTTTGGGAAGAACAAGACCAACTTCTGCGGGCGACATTGTGCAAGAGCAGTAGCGTTGAATCGAAAATTCGACAAGCCACTAAGGAAGCGTTAAGGGAAATCAATTCATCAAGCGAAGAATACTGCGTTTGTGCGAGAACGGTGGCCGGAGGTTGCCGGAAATGTTTGCGTACCGAAGTATGCAAACGGCTAATTGAATCCGGATACAATTGTGTCATTTGCAAGTCTAAGTGGAGAAGTTCAACAAATGCCCCTGCAGGGGAGCATACTTATTTGGAAGTGCTGGACAACAGTTCAAAGAGAGGGGAGATTAGGGTTGCAATTGAGCTAAATTTCGGACCTGAGTTCGAGATGGCAAGAGCTAGCGAAAACTACAACAGAATGATTAGCTGGTTGCCTGAAGTGTTTGTTGGGAAAGCCGAAAGACTACGAGCTTTGATCAAGATTTTGTGCCGCGCAGCCAAGAAATGTATGAAGGAGAAGAAGATGCACTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCCAAGTGGTTTGGGACGTTGGAGCGGTCAACGCCGGGGTCGTTGCCAGTCGGATTTTCGCACGGGCTGCCGAAGCCGAAGGCCTCGATTTTGGCCTTTGATTTGTTGGAGGTGGCGATGACTGCAGGCTTGCATTGCTCTAGTACTGCAGTTGAAGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

296

Amino Acids

32.9

Weight (kDa)

6.28

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	748
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	654
AccIII	TCCGGA	2 cut(s)	36, 398
AciI	CCGC	4 cut(s)	6, 226, 652, 748
AcoI	YGGCCR	2 cut(s)	3, 342
AcsI	RAATTY	4 cut(s)	59, 169, 264, 529
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	4 cut(s)	70, 370, 716, 868
AfiI	CCNNNNNNNGG	3 cut(s)	71, 456, 457
AgsI	TTSAA	6 cut(s)	59, 257, 395, 441, 495, 878
AjuI	GAANNNNNNNTTGG	4 cut(s)	591, 623, 674, 706
AluBI	AGCT	4 cut(s)	526, 560, 588, 632
AluI	AGCT	4 cut(s)	526, 560, 588, 632
Alw26I	GTCTC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	2 cut(s)	36, 398
AoxI	GGCC	4 cut(s)	3, 342, 804, 816
ApeKI	GCWGC	3 cut(s)	8, 656, 790
ApoI	RAATTY	4 cut(s)	59, 169, 264, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	536, 695
AsuC2I	CCSGG	2 cut(s)	66, 759
AsuNHI	GCTAGC	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	536, 695
BaeI	ACNNNNGTAYC	4 cut(s)	60, 93, 394, 427
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	20, 668, 777
BccI	CCATC	2 cut(s)	7, 544
BceAI	ACGGC	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	395
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	2 cut(s)	66, 759
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	561, 864
BfmI	CTRYAG	3 cut(s)	453, 846, 870
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	5 cut(s)	6, 9, 652, 657, 791
BlsI	GCNGC	5 cut(s)	7, 10, 653, 658, 792
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	2 cut(s)	66, 759
Bme18I	GGWCC	2 cut(s)	536, 695
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	536, 695
BmiI	GGNNCC	2 cut(s)	151, 696
BmrFI	CCNGG	2 cut(s)	66, 759
BmsI	GCATC	1 cut(s)	675
BmtI	GCTAGC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	66, 759
BsaJI	CCNNGG	2 cut(s)	698, 758
BsaWI	WCCGGW	2 cut(s)	36, 398
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 456, 457
Bse1I	ACTGG	1 cut(s)	770
Bse3DI	GCAATG	1 cut(s)	856
BseAI	TCCGGA	2 cut(s)	36, 398
BseDI	CCNNGG	2 cut(s)	698, 758
BseLI	CCNNNNNNNGG	3 cut(s)	71, 456, 457
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	770
BseXI	GCAGC	3 cut(s)	20, 668, 777
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	4 cut(s)	5, 344, 806, 818
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	6 cut(s)	37, 66, 345, 355, 399, 758
BslFI	GGGAC	3 cut(s)	101, 708, 751
BslI	CCNNNNNNNGG	3 cut(s)	71, 456, 457
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	3 cut(s)	101, 708, 751
BsnI	GGCC	4 cut(s)	5, 344, 806, 818
BsoBI	CYCGRG	1 cut(s)	83
Bsp13I	TCCGGA	2 cut(s)	36, 398
Bsp143I	GATC	1 cut(s)	636
BspACI	CCGC	4 cut(s)	6, 226, 652, 748
BspANI	GGCC	4 cut(s)	5, 344, 806, 818
BspCNI	CTCAG	1 cut(s)	532
BspEI	TCCGGA	2 cut(s)	36, 398
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	151, 696
BspMAI	CTGCAG	3 cut(s)	457, 850, 874
BspOI	GCTAGC	1 cut(s)	564
BsrBI	CCGCTC	1 cut(s)	748
BsrDI	GCAATG	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	698, 758
BssMI	GATC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	340, 491
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstC8I	GCNNGC	5 cut(s)	228, 562, 723, 850, 854
BstDEI	CTNAG	3 cut(s)	279, 426, 540
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	1 cut(s)	639
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	5 cut(s)	754, 790, 796, 845, 858
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	64, 757
BstSFI	CTRYAG	3 cut(s)	453, 846, 870
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	20, 668, 777
BstV2I	GAAGAC	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	5, 344, 806, 818
BtgZI	GCGATG	2 cut(s)	26, 854
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	5 cut(s)	228, 562, 723, 850, 854
CfoI	GCGC	1 cut(s)	656
Cfr13I	GGNCC	2 cut(s)	536, 695
Csp6I	GTAC	4 cut(s)	69, 369, 715, 867
CspCI	CAANNNNNGTGG	2 cut(s)	710, 745
CviAII	CATG	2 cut(s)	91, 718
CviQI	GTAC	4 cut(s)	69, 369, 715, 867
DdeI	CTNAG	3 cut(s)	279, 426, 540
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
EaeI	YGGCCR	2 cut(s)	3, 342
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	698
Eco147I	AGGCCT	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	536, 695
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	2 cut(s)	94, 721
FaiI	YATR	6 cut(s)	53, 92, 379, 465, 671, 719
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 674, 706
FaqI	GGGAC	3 cut(s)	101, 708, 751
FatI	CATG	2 cut(s)	90, 717
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	5 cut(s)	6, 9, 652, 657, 791
Fsp4HI	GCNGC	5 cut(s)	6, 9, 652, 657, 791
FspBI	CTAG	2 cut(s)	561, 864
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	5 cut(s)	6, 9, 652, 657, 791
HaeIII	GGCC	4 cut(s)	5, 344, 806, 818
HapII	CCGG	6 cut(s)	37, 66, 345, 355, 399, 758
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	2 cut(s)	94, 721
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HincII	GTYRAC	2 cut(s)	126, 753
HindII	GTYRAC	2 cut(s)	126, 753
HinfI	GANTC	3 cut(s)	31, 257, 395
HpaII	CCGG	6 cut(s)	37, 66, 345, 355, 399, 758
Hpy166II	GTNNAC	2 cut(s)	126, 753
Hpy188I	TCNGA	4 cut(s)	46, 154, 536, 776
Hpy188III	TCNNGA	5 cut(s)	37, 98, 399, 547, 640
Hpy8I	GTNNAC	2 cut(s)	126, 753
Hpy99I	CGWCG	4 cut(s)	50, 130, 158, 167
HpyAV	CCTTC	2 cut(s)	667, 796
HpyCH4III	ACNGT	2 cut(s)	340, 491
HpyCH4IV	ACGT	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	754, 790, 796, 845, 858
HpyF3I	CTNAG	3 cut(s)	279, 426, 540
HpySE526I	ACGT	1 cut(s)	740
Hsp92II	CATG	2 cut(s)	94, 721
HspAI	GCGC	1 cut(s)	654
Kpn2I	TCCGGA	2 cut(s)	36, 398
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	1 cut(s)	636
LmnI	GCTCC	3 cut(s)	155, 460, 745
Lsp1109I	GCAGC	3 cut(s)	20, 668, 777
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	2 cut(s)	561, 864
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	638
MbiI	CCGCTC	1 cut(s)	748
MboI	GATC	1 cut(s)	636
MboII	GAAGA	6 cut(s)	170, 197, 218, 326, 691, 694
MfeI	CAATTG	2 cut(s)	406, 519
MluCI	AATT	8 cut(s)	59, 169, 264, 301, 390, 406, 519, 529
MmeI	TCCRAC	5 cut(s)	69, 177, 723, 754, 810
MnlI	CCTC	8 cut(s)	103, 112, 154, 341, 494, 696, 817, 826
MroI	TCCGGA	2 cut(s)	36, 398
MseI	TTAA	2 cut(s)	135, 290
MspI	CCGG	6 cut(s)	37, 66, 345, 355, 399, 758
MspR9I	CCNGG	2 cut(s)	66, 759
MunI	CAATTG	2 cut(s)	406, 519
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	754, 790, 796, 845, 858
NciI	CCSGG	2 cut(s)	66, 759
NdeII	GATC	1 cut(s)	636
NheI	GCTAGC	1 cut(s)	560
NlaIII	CATG	2 cut(s)	94, 721
NlaIV	GGNNCC	2 cut(s)	151, 696
NspI	RCATGY	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 162, 761
PfeI	GAWTC	3 cut(s)	31, 257, 395
PkrI	GCNGC	5 cut(s)	7, 10, 653, 658, 792
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	151, 696
PspPI	GGNCC	2 cut(s)	536, 695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	3 cut(s)	457, 850, 874
RsaI	GTAC	4 cut(s)	70, 370, 716, 868
RsaNI	GTAC	4 cut(s)	69, 369, 715, 867
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	135, 290
SatI	GCNGC	5 cut(s)	6, 9, 652, 657, 791
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	2 cut(s)	536, 695
SbfI	CCTGCAGG	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	868
ScrFI	CCNGG	2 cut(s)	66, 759
SdaI	CCTGCAGG	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	3 cut(s)	453, 846, 870
SinI	GGWCC	2 cut(s)	536, 695
Sse8387I	CCTGCAGG	1 cut(s)	457
Sse9I	AATT	8 cut(s)	59, 169, 264, 301, 390, 406, 519, 529
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	4 cut(s)	6, 226, 652, 748
SspMI	CTAG	2 cut(s)	561, 864
StuI	AGGCCT	1 cut(s)	806
StyD4I	CCNGG	2 cut(s)	64, 757
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	2 cut(s)	340, 491
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	7 cut(s)	108, 117, 125, 260, 268, 546, 809
TasI	AATT	8 cut(s)	59, 169, 264, 301, 390, 406, 519, 529
TatI	WGTACW	2 cut(s)	714, 866
TauI	GCSGC	2 cut(s)	8, 654
TfiI	GAWTC	3 cut(s)	31, 257, 395
Tru1I	TTAA	2 cut(s)	135, 290
Tru9I	TTAA	2 cut(s)	135, 290
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	8, 656, 790
TspDTI	ATGAA	3 cut(s)	94, 294, 686
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	536, 695
XapI	RAATTY	4 cut(s)	59, 169, 264, 529
XceI	RCATGY	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	2 cut(s)	561, 864
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.