Rh5AG065500

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003387
Physical Location & Seq
Forward (+)
5486126 .. 5488285
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG065500.1

Sequence Viewer

Length: 657 bp
ATGTTGCAGGCAACGTTATGCAGGACTAGTTCTCTAGAGACGAAGATTAGGAGCGTGACAAAGGAAACGGTGAAGGAGTCGGGGGAGGCGGTGTGCGGTTGTGGGAAGGCGGCGAGTGGTTGCCGGAGCTGCCTTATGAGGGAAGTTTCCGGCAGGCTTTGCAATGCTGGTTACAACAGTGCCATATGCAAGTCCAAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACACATTTTTGGATGTGGTGGACAATTCAAGCTCAAGGAAAGGAGAGGTGAGGGTGATCATAGAACTCAACTTCAGAGCCGAGTTTGAGATGGCGAGAGCAAGCGACGAATACAACACATTGGTGCAACGACTTCCCGAAATCTTTGTCGGCAAGGTCGAAAGACTTCAAAATTTGATCAAAATTTTGTGTTCGGCTGCCAAGAAGTGTATGAAGGAGAAGAAAATGCACATGGGGCCGTGGAGGAAGCAAAAGTACATGCAAGCTAAATGGCTTGGTGCCTGCAAGAGAACGACGTCAACACCGCCTTTGTCAATGGGGCAATCGGATCAGCTGCGGCCGAGGCCGAAGGCATCGATGCTAACTGTTGATTTGCTAGGAGAGATGATGCCTAATATGCACTGCAAAGTGGTTGCAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

218

Amino Acids

24.33

Weight (kDa)

9.5

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 2 - 174 2.2e-73 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 5 cut(s) 89, 96, 110, 536, 568
AclI AACGTT 1 cut(s) 14
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 2 cut(s) 403, 414
AcuI CTGAAG 2 cut(s) 207, 289
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 2 cut(s) 139, 201
AgsI TTSAA 2 cut(s) 261, 401
AhlI ACTAGT 1 cut(s) 26
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 4 cut(s) 129, 264, 497, 565
AluI AGCT 4 cut(s) 129, 264, 497, 565
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 567
AoxI GGCC 3 cut(s) 467, 569, 575
ApeKI GCWGC 3 cut(s) 129, 428, 565
ApoI RAATTY 2 cut(s) 403, 414
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 82, 292, 298
BanI GGYRCC 1 cut(s) 509
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 116, 415, 552
BccI CCATC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 454
BclI TGATCA 2 cut(s) 288, 408
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 35, 608
BisI GCNGC 5 cut(s) 111, 130, 429, 566, 569
BlsI GCNGC 5 cut(s) 112, 131, 430, 567, 570
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 468, 511
BmsI GCATC 3 cut(s) 579, 593, 609
BpuEI CTTGAG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 470, 572
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 201
Bse3DI GCAATG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 587
BseDI CCNNGG 2 cut(s) 470, 572
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 139, 201
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 116, 415, 552
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 3 cut(s) 469, 571, 577
BshNI GGYRCC 1 cut(s) 509
BshVI ATCGAT 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 124, 150, 212
BslI CCNNNNNNNGG 2 cut(s) 139, 201
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 3 cut(s) 469, 571, 577
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 288, 408, 559
BspACI CCGC 5 cut(s) 89, 96, 110, 536, 568
BspANI GGCC 3 cut(s) 469, 571, 577
BspDI ATCGAT 1 cut(s) 587
BspLI GGNNCC 2 cut(s) 468, 511
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 470, 572
BssMI GATC 3 cut(s) 288, 408, 559
BssNI GRCGYC 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 70, 179, 598
BstACI GRCGYC 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 5 cut(s) 9, 155, 334, 495, 514
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 3 cut(s) 291, 411, 562
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 288, 408, 559
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 5 cut(s) 129, 159, 466, 574, 628
BstNSI RCATGY 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 116, 415, 552
BstZI CGGCCG 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 587
BsuRI GGCC 3 cut(s) 469, 571, 577
BsuTUI ATCGAT 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 2 cut(s) 184, 631
Cac8I GCNNGC 5 cut(s) 9, 155, 334, 495, 514
Cfr13I GGNCC 1 cut(s) 467
ClaI ATCGAT 1 cut(s) 587
Csp6I GTAC 1 cut(s) 487
CviAII CATG 2 cut(s) 463, 490
CviQI GTAC 1 cut(s) 487
DpnI GATC 3 cut(s) 290, 410, 561
DpnII GATC 3 cut(s) 288, 408, 559
EaeI YGGCCR 1 cut(s) 569
EagI CGGCCG 1 cut(s) 569
EclXI CGGCCG 1 cut(s) 569
Eco52I CGGCCG 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 207, 289
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 466, 493
FaiI YATR 9 cut(s) 19, 137, 185, 187, 293, 443, 464, 491, 629
FatI CATG 2 cut(s) 462, 489
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 2 cut(s) 288, 408
Fnu4HI GCNGC 5 cut(s) 111, 130, 429, 566, 569
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 5 cut(s) 111, 130, 429, 566, 569
FspBI CTAG 3 cut(s) 27, 35, 608
GluI GCNGC 5 cut(s) 111, 130, 429, 566, 569
HaeIII GGCC 3 cut(s) 469, 571, 577
HapII CCGG 3 cut(s) 124, 150, 212
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 2 cut(s) 466, 493
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 124, 150, 212
HphI GGTGA 3 cut(s) 82, 292, 298
Hpy166II GTNNAC 2 cut(s) 253, 531
Hpy188I TCNGA 2 cut(s) 308, 559
Hpy188III TCNNGA 3 cut(s) 35, 225, 368
Hpy8I GTNNAC 2 cut(s) 253, 531
Hpy99I CGWCG 2 cut(s) 341, 529
HpyAV CCTTC 5 cut(s) 67, 100, 231, 439, 574
HpyCH4III ACNGT 3 cut(s) 70, 179, 598
HpyCH4IV ACGT 2 cut(s) 14, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 159, 466, 574, 628
HpySE526I ACGT 2 cut(s) 14, 527
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 2 cut(s) 466, 493
Ksp22I TGATCA 2 cut(s) 288, 408
Kzo9I GATC 3 cut(s) 288, 408, 559
LmnI GCTCC 2 cut(s) 51, 126
LpnPI CCDG 8 cut(s) 7, 137, 139, 153, 163, 210, 225, 526
Lsp1109I GCAGC 3 cut(s) 116, 415, 552
LweI GCATC 3 cut(s) 579, 593, 609
MaeI CTAG 3 cut(s) 27, 35, 608
MaeII ACGT 2 cut(s) 14, 527
MaeIII GTNAC 2 cut(s) 55, 170
MalI GATC 3 cut(s) 290, 410, 561
MboI GATC 3 cut(s) 288, 408, 559
MboII GAAGA 2 cut(s) 55, 463
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 256, 403, 414
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 7 cut(s) 79, 132, 195, 271, 276, 468, 567
MroXI GAANNNNTTC 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 3 cut(s) 124, 150, 212
MwoI GCNNNNNNNGC 5 cut(s) 129, 159, 466, 574, 628
NdeI CATATG 1 cut(s) 185
NdeII GATC 3 cut(s) 288, 408, 559
NlaIII CATG 2 cut(s) 466, 493
NlaIV GGNNCC 2 cut(s) 468, 511
NmeAIII GCCGAG 2 cut(s) 337, 597
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 493
OliI CACNNNNGTG 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 396
PkrI GCNGC 5 cut(s) 112, 131, 430, 567, 570
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 468, 511
PspPI GGNCC 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 5 cut(s) 111, 130, 429, 566, 569
Sau3AI GATC 3 cut(s) 288, 408, 559
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 17, 131, 266, 282, 390, 499, 530, 567
SfaNI GCATC 3 cut(s) 579, 593, 609
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 3 cut(s) 256, 403, 414
SsiI CCGC 5 cut(s) 89, 96, 110, 536, 568
SspMI CTAG 3 cut(s) 27, 35, 608
TaaI ACNGT 3 cut(s) 70, 179, 598
TaiI ACGT 2 cut(s) 17, 530
TaqI TCGA 2 cut(s) 390, 587
TasI AATT 3 cut(s) 256, 403, 414
TatI WGTACW 1 cut(s) 486
TauI GCSGC 2 cut(s) 113, 571
TscAI CASTG 2 cut(s) 184, 638
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 129, 428, 565
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 2 cut(s) 184, 638
XapI RAATTY 2 cut(s) 403, 414
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 27, 35, 608
ZraI GACGTC 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.