Rw2G026090

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003387
Physical Location & Seq
Forward (+)
40042752 .. 40044081
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026090.1

Sequence Viewer

Length: 879 bp
ATGCCCGGAGTAATGCTTAGAATTCCGGTTACTCGCCTGAGCGCCGACGATATTTTGGAATTTCCCGGCAGAGCTGCCAGTCTTTCTGACATGGTTCTGGGGTTTATCGAGGAACCTGCCACGGATGCCTTCCCGGGCAATATCACGTCAGGCTCCGATGAGGAAGAGGAAGATGAAGCTTCTGTGGAGGAGAACAAGGCATTTTGGGAGGAACAACACCAACTTCTCCAAGCAACGTTGTGTAGAAGCAGTGGCGTAGAAAAGAAAATTCGACAAGCCACCAAGGAGGCGCTGAGAGAAACTATGAATAGCATGTATTGCGTCTGTTCGAGGGCGGTGGCCGGAGACTGCCGGAATTGTTTGCGAAGGGAAATATGCAATCGCCTTATTAGTTTAGGTTACAACTGTGCCATTTGCAAATCCAAATGGAGAAGCTCAGCAAATATCCCATCAGGAGAGCACACTTTTTTGGAAGTGCTAGACAATTCGGATACAAAGAGAGGGGAGATTAGGGTAGTGATCGAGCTCAATTTCCGAGCAGAGTTTGAGATGGCCAGAGCTAGCCAAGACTACAACCGTTTAATTAGCTTTTTGCCAGAAGTCTTTGTCGGGAAAGCCGAAAGACTACGAGTCTTGATCAAAATTTTGTGCAGCGCGGCTAAAAAATGTATGAAAGAGAAGAAAATGCATTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCTAAGTGGCTTGGAACCTTTGAGCGATCAACTCCGGGATCGTTACCGGTCGGAGGATATAGAAACCGGCCACCGAAGCCGAGGGCATCCATGTTGACCTTCGACTTGTCCAAGGCTATGCCCGGCTTGCATTGCACGGCAGTTGAGGTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

292

Amino Acids

32.9

Weight (kDa)

8.6

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 29 - 250 7.3e-77 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccII CGCG 1 cut(s) 656
AciI CCGC 2 cut(s) 335, 656
AclI AACGTT 1 cut(s) 236
AclWI GGATC 1 cut(s) 769
AcoI YGGCCR 3 cut(s) 339, 552, 791
AcsI RAATTY 4 cut(s) 21, 59, 267, 642
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 1 cut(s) 776
AgeI ACCGGT 1 cut(s) 769
AhdI GACNNNNNGTC 1 cut(s) 629
AjiI CACGTC 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 7 cut(s) 74, 179, 435, 526, 560, 588, 725
AluI AGCT 7 cut(s) 74, 179, 435, 526, 560, 588, 725
Alw21I GWGCWC 2 cut(s) 462, 528
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 769
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 3 cut(s) 339, 552, 791
ApeKI GCWGC 2 cut(s) 74, 651
ApoI RAATTY 4 cut(s) 21, 59, 267, 642
AsiGI ACCGGT 1 cut(s) 769
AspLEI GCGC 3 cut(s) 44, 292, 656
AspS9I GGNCC 1 cut(s) 695
AsuC2I CCSGG 6 cut(s) 6, 66, 134, 135, 759, 846
AsuNHI GCTAGC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 554
BanII GRGCYC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
Bbv12I GWGCWC 2 cut(s) 462, 528
BbvI GCAGC 2 cut(s) 61, 663
BccI CCATC 2 cut(s) 457, 544
BceAI ACGGC 1 cut(s) 876
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 6 cut(s) 6, 66, 134, 135, 759, 846
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 479, 561
BfoI RGCGCY 2 cut(s) 45, 293
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 3 cut(s) 75, 652, 657
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 3 cut(s) 76, 653, 658
Bme1390I CCNGG 6 cut(s) 6, 66, 134, 135, 759, 846
Bme18I GGWCC 1 cut(s) 695
BmeRI GACNNNNNGTC 1 cut(s) 629
BmeT110I CYCGRG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 695
BmiI GGNNCC 4 cut(s) 114, 154, 696, 739
BmrFI CCNGG 6 cut(s) 6, 66, 134, 135, 759, 846
BmsI GCATC 2 cut(s) 115, 818
BmtI GCTAGC 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 436
BpuMI CCSGG 6 cut(s) 6, 66, 134, 135, 759, 846
BsaJI CCNNGG 6 cut(s) 120, 133, 282, 698, 803, 834
BsaWI WCCGGW 2 cut(s) 25, 769
Bsc4I CCNNNNNNNGG 1 cut(s) 776
Bse118I RCCGGY 2 cut(s) 769, 789
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 853
BseDI CCNNGG 6 cut(s) 120, 133, 282, 698, 803, 834
BseGI GGATG 2 cut(s) 130, 809
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 3 cut(s) 29, 284, 450
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 61, 663
BsgI GTGCAG 1 cut(s) 670
Bsh1236I CGCG 1 cut(s) 656
Bsh1285I CGRYCG 1 cut(s) 774
BshFI GGCC 3 cut(s) 341, 554, 793
BshTI ACCGGT 1 cut(s) 769
BsiEI CGRYCG 1 cut(s) 774
BsiHKAI GWGCWC 2 cut(s) 462, 528
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 1 cut(s) 776
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 3 cut(s) 341, 554, 793
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 462, 528
Bsp143I GATC 4 cut(s) 519, 636, 749, 761
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 2 cut(s) 335, 656
BspANI GGCC 3 cut(s) 341, 554, 793
BspCNI CTCAG 3 cut(s) 30, 285, 449
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 4 cut(s) 114, 154, 696, 739
BspMI ACCTGC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 564
BspPI GGATC 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 2 cut(s) 769, 789
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 2 cut(s) 769, 789
BssECI CCNNGG 6 cut(s) 120, 133, 282, 698, 803, 834
BssMI GATC 4 cut(s) 519, 636, 749, 761
BssT1I CCWWGG 3 cut(s) 282, 698, 834
Bst4CI ACNGT 2 cut(s) 407, 578
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 562, 723, 851
BstDEI CTNAG 5 cut(s) 17, 38, 293, 436, 726
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 130, 809
BstFNI CGCG 1 cut(s) 656
BstH2I RGCGCY 2 cut(s) 45, 293
BstHHI GCGC 3 cut(s) 44, 292, 656
BstKTI GATC 4 cut(s) 522, 639, 752, 764
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 519, 636, 749, 761
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 5 cut(s) 125, 318, 799, 850, 855
BstNSI RCATGY 2 cut(s) 316, 721
BstSCI CCNGG 6 cut(s) 4, 64, 132, 133, 757, 844
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 2 cut(s) 61, 663
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 3 cut(s) 341, 554, 793
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 130, 809
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 562, 723, 851
CfoI GCGC 3 cut(s) 44, 292, 656
Cfr10I RCCGGY 2 cut(s) 769, 789
Cfr13I GGNCC 1 cut(s) 695
Cfr9I CCCGGG 1 cut(s) 133
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 715
CspAI ACCGGT 1 cut(s) 769
CspCI CAANNNNNGTGG 2 cut(s) 710, 745
CviAII CATG 4 cut(s) 91, 313, 718, 814
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 5 cut(s) 17, 38, 293, 436, 726
DpnI GATC 4 cut(s) 521, 638, 751, 763
DpnII GATC 4 cut(s) 519, 636, 749, 761
DriI GACNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 3 cut(s) 339, 552, 791
Eam1104I CTCTTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 3 cut(s) 282, 698, 834
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 21
EcoT14I CCWWGG 3 cut(s) 282, 698, 834
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 3 cut(s) 282, 698, 834
FaeI CATG 4 cut(s) 94, 316, 721, 817
FaiI YATR 9 cut(s) 92, 305, 314, 376, 671, 719, 783, 815, 842
FaqI GGGAC 1 cut(s) 708
FatI CATG 4 cut(s) 90, 312, 717, 813
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 3 cut(s) 75, 652, 657
FokI GGATG 2 cut(s) 137, 796
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 75, 652, 657
FspBI CTAG 2 cut(s) 479, 561
GlaI GCGC 3 cut(s) 43, 291, 655
GluI GCNGC 3 cut(s) 75, 652, 657
HaeII RGCGCY 2 cut(s) 45, 293
HaeIII GGCC 3 cut(s) 341, 554, 793
HgaI GACGC 1 cut(s) 310
HhaI GCGC 3 cut(s) 44, 292, 656
Hin1II CATG 4 cut(s) 94, 316, 721, 817
Hin6I GCGC 3 cut(s) 42, 290, 654
HinP1I GCGC 3 cut(s) 42, 290, 654
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 630
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 5 cut(s) 88, 157, 490, 536, 776
Hpy188III TCNNGA 3 cut(s) 453, 610, 634
Hpy8I GTNNAC 1 cut(s) 819
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 139, 360, 832
HpyCH4III ACNGT 2 cut(s) 407, 578
HpyCH4IV ACGT 2 cut(s) 146, 236
HpyCH4V TGCA 7 cut(s) 378, 417, 651, 688, 721, 853, 858
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 318, 799, 850, 855
HpyF3I CTNAG 5 cut(s) 17, 38, 293, 436, 726
HpySE526I ACGT 2 cut(s) 146, 236
Hsp92II CATG 4 cut(s) 94, 316, 721, 817
HspAI GCGC 3 cut(s) 42, 290, 654
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 4 cut(s) 519, 636, 749, 761
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 61, 663
LweI GCATC 2 cut(s) 115, 818
MaeI CTAG 2 cut(s) 479, 561
MaeII ACGT 2 cut(s) 146, 236
MaeIII GTNAC 3 cut(s) 28, 398, 765
MalI GATC 4 cut(s) 521, 638, 751, 763
MboI GATC 4 cut(s) 519, 636, 749, 761
MboII GAAGA 3 cut(s) 176, 182, 691
MhlI GDGCHC 2 cut(s) 462, 528
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 8 cut(s) 21, 59, 267, 355, 484, 529, 582, 642
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 1 cut(s) 639
MmeI TCCRAC 1 cut(s) 754
Mox20I TGGCCA 1 cut(s) 554
Mph1103I ATGCAT 1 cut(s) 690
MscI TGGCCA 1 cut(s) 554
MseI TTAA 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 554
MspR9I CCNGG 6 cut(s) 6, 66, 134, 135, 759, 846
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 5 cut(s) 125, 318, 799, 850, 855
NciI CCSGG 6 cut(s) 6, 66, 134, 135, 759, 846
NdeII GATC 4 cut(s) 519, 636, 749, 761
NheI GCTAGC 1 cut(s) 560
NlaIII CATG 4 cut(s) 94, 316, 721, 817
NlaIV GGNNCC 4 cut(s) 114, 154, 696, 739
NmeAIII GCCGAG 1 cut(s) 828
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 2 cut(s) 316, 721
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfoI TCCNGGA 1 cut(s) 757
PinAI ACCGGT 1 cut(s) 769
PkrI GCNGC 3 cut(s) 76, 653, 658
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 695
PspN4I GGNNCC 4 cut(s) 114, 154, 696, 739
PspPI GGNCC 1 cut(s) 695
PspPPI RGGWCCY 1 cut(s) 695
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 3 cut(s) 75, 652, 657
Sau3AI GATC 4 cut(s) 519, 636, 749, 761
Sau96I GGNCC 1 cut(s) 695
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 6 cut(s) 6, 66, 134, 135, 759, 846
SduI GDGCHC 2 cut(s) 462, 528
SfaNI GCATC 2 cut(s) 115, 818
SinI GGWCC 1 cut(s) 695
SmaI CCCGGG 1 cut(s) 135
Sse9I AATT 8 cut(s) 21, 59, 267, 355, 484, 529, 582, 642
SsiI CCGC 2 cut(s) 335, 656
SspMI CTAG 2 cut(s) 479, 561
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 6 cut(s) 4, 64, 132, 133, 757, 844
StyI CCWWGG 3 cut(s) 282, 698, 834
TaaI ACNGT 2 cut(s) 407, 578
TaiI ACGT 2 cut(s) 149, 239
TaqI TCGA 5 cut(s) 108, 271, 329, 522, 825
TasI AATT 8 cut(s) 21, 59, 267, 355, 484, 529, 582, 642
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 74, 651
TspDTI ATGAA 3 cut(s) 189, 320, 686
TspGWI ACGGA 1 cut(s) 137
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 695
XapI RAATTY 4 cut(s) 21, 59, 267, 642
XceI RCATGY 2 cut(s) 316, 721
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 2 cut(s) 479, 561
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.