MD05G1338400.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003387
Physical Location & Seq
Reverse (-)
45984155 .. 45985496
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1338400.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGGTAGAGAAACTCCGGCCACCGCTCGAGAATTATTGGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTCCTTGAGGACTGCAACGAGTTCCCAGAAAGTTACGGCAGCAGCACCGAAGGCTGCCAAGAAAATGAAGCCTACTTGTTAGATGAAGAGGAAGAAGCTGGAGATCAGGAGAAGGACATGAGGTTTTGGGATAACCAGCACCAACTTTTACAAGCTACGTTATGCAGGACTAGTTCTCTAGAGACGAGGATTAGGAGTTTGACAAGGGAGGCGGTGAAGGAGATACAGCGGTCGGGGATGGAGTGTGGTTGCGGGAAAACGATGGCGGGCGGTTGCCGGAGCTGCCTCTTGAGAGAAGTTTCCGGCAGACTTTGCAATGATGGTCACAACAGTGCCATCTGCAAGTCTAAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACGCATTTTTGGATGTGGTGGATAATTCAAGCCTAAAGAAGGGAGAGGTGAGAGTGATCATAGAGCTGAACTTCAGAGCCGAATTCGAGATGGCTCGAGCAGGCGACCAATACAACAATCTGGTTCAAAAACTTCCCGAAGTGTTTGTTGGCAAAGTTGAGAGACTGCAAAGCCTGATTAAAATTTTATGTTCTGCTGCAAAGAAATGCATGAAGGAAAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCAAAATGGCTTAGCCCCTGCAAAAGAACAACATTGACACCTGTTTTGGCTGTGGGAGACTCCGCCCGGCTGCGACCGAAGCCTAAGGAGTCAATGTTAACCATAGATTTGTTAGAGATGATGCCTAACAGGCATTGCATGACAGCAATTCAAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

293

Amino Acids

32.93

Weight (kDa)

7.91

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 248 1.4e-78 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 26
AciI CCGC 8 cut(s) 24, 41, 281, 298, 321, 335, 339, 780
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 536, 636
AcuI CTGAAG 2 cut(s) 429, 511
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 1 cut(s) 493
AgsI TTSAA 3 cut(s) 483, 581, 869
AhlI ACTAGT 1 cut(s) 239
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 4 cut(s) 167, 224, 351, 520
AluI AGCT 4 cut(s) 167, 224, 351, 520
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 3 cut(s) 245, 610, 768
Ama87I CYCGRG 2 cut(s) 27, 549
AoxI GGCC 2 cut(s) 18, 689
ApeKI GCWGC 6 cut(s) 108, 111, 123, 351, 650, 787
ApoI RAATTY 2 cut(s) 536, 636
ArsI GACNNNNNNTTYG 2 cut(s) 745, 777
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 784
AsuHPI GGTGA 2 cut(s) 295, 514
AvaI CYCGRG 2 cut(s) 27, 549
AxyI CCTNAGG 1 cut(s) 801
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 6 cut(s) 110, 120, 123, 338, 637, 774
BccI CCATC 5 cut(s) 301, 325, 383, 413, 538
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 784
BcoDI GTCTC 3 cut(s) 245, 610, 768
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 248
BglI GCCNNNNNGGC 1 cut(s) 847
BisI GCNGC 7 cut(s) 42, 109, 112, 124, 352, 651, 788
BlpI GCTNAGC 1 cut(s) 728
BlsI GCNGC 7 cut(s) 43, 110, 113, 125, 353, 652, 789
Bme1390I CCNGG 1 cut(s) 784
BmeT110I CYCGRG 2 cut(s) 27, 549
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 71, 690
BmrFI CCNGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 728
BpuEI CTTGAG 2 cut(s) 95, 379
BpuMI CCSGG 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse21I CCTNAGG 1 cut(s) 801
Bse3DI GCAATG 2 cut(s) 391, 850
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 2 cut(s) 312, 472
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMI GCAATG 2 cut(s) 391, 850
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 6 cut(s) 110, 120, 123, 338, 637, 774
Bsh1285I CGRYCG 2 cut(s) 302, 794
BshFI GGCC 2 cut(s) 20, 691
BsiEI CGRYCG 2 cut(s) 302, 794
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 2 cut(s) 27, 549
BsiSI CCGG 6 cut(s) 17, 54, 346, 372, 434, 784
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 3 cut(s) 245, 610, 768
BsmBI CGTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 20, 691
BsoBI CYCGRG 2 cut(s) 27, 549
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 172, 510
Bsp1720I GCTNAGC 1 cut(s) 728
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 8 cut(s) 24, 41, 281, 298, 321, 335, 339, 780
BspANI GGCC 2 cut(s) 20, 691
BspLI GGNNCC 2 cut(s) 71, 690
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 391, 850
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 2 cut(s) 172, 510
BssT1I CCWWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 4 cut(s) 337, 456, 556, 717
BstDEI CTNAG 3 cut(s) 417, 728, 801
BstDSI CCRYGG 1 cut(s) 692
BstENI CCTNNNNNAGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 312, 472
BstKTI GATC 2 cut(s) 175, 513
BstMAI GTCTC 3 cut(s) 245, 610, 768
BstMBI GATC 2 cut(s) 172, 510
BstMCI CGRYCG 2 cut(s) 302, 794
BstMWI GCNNNNNNNGC 6 cut(s) 120, 351, 381, 688, 796, 847
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 782
BstV1I GCAGC 6 cut(s) 110, 120, 123, 338, 637, 774
Bsu36I CCTNAGG 1 cut(s) 801
BsuRI GGCC 2 cut(s) 20, 691
BtgI CCRYGG 1 cut(s) 692
BtsCI GGATG 2 cut(s) 312, 472
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 4 cut(s) 337, 456, 556, 717
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 1 cut(s) 709
CviAII CATG 7 cut(s) 58, 187, 664, 685, 693, 712, 856
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 3 cut(s) 417, 728, 801
DpnI GATC 2 cut(s) 174, 512
DpnII GATC 2 cut(s) 172, 510
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 692
Eco57I CTGAAG 2 cut(s) 429, 511
Eco81I CCTNAGG 1 cut(s) 801
Eco88I CYCGRG 2 cut(s) 27, 549
EcoNI CCTNNNNNAGG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 692
EcoT22I ATGCAT 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 692
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 7 cut(s) 61, 190, 667, 688, 696, 715, 859
FatI CATG 7 cut(s) 57, 186, 663, 684, 692, 711, 855
FauI CCCGC 2 cut(s) 314, 328
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 7 cut(s) 42, 109, 112, 124, 352, 651, 788
FokI GGATG 2 cut(s) 319, 479
Fsp4HI GCNGC 7 cut(s) 42, 109, 112, 124, 352, 651, 788
FspBI CTAG 2 cut(s) 240, 248
GluI GCNGC 7 cut(s) 42, 109, 112, 124, 352, 651, 788
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 2 cut(s) 20, 691
HapII CCGG 6 cut(s) 17, 54, 346, 372, 434, 784
Hin1II CATG 7 cut(s) 61, 190, 667, 688, 696, 715, 859
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HinfI GANTC 2 cut(s) 776, 806
HpaI GTTAAC 1 cut(s) 816
HpaII CCGG 6 cut(s) 17, 54, 346, 372, 434, 784
HphI GGTGA 2 cut(s) 295, 514
Hpy166II GTNNAC 1 cut(s) 816
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 7 cut(s) 29, 176, 248, 358, 447, 541, 590
Hpy8I GTNNAC 1 cut(s) 816
HpyAV CCTTC 6 cut(s) 113, 175, 280, 453, 487, 661
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 351, 381, 688, 796, 847
HpyF3I CTNAG 3 cut(s) 417, 728, 801
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 7 cut(s) 61, 190, 667, 688, 696, 715, 859
Ksp22I TGATCA 1 cut(s) 510
KspAI GTTAAC 1 cut(s) 816
Kzo9I GATC 2 cut(s) 172, 510
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 6 cut(s) 110, 120, 123, 338, 637, 774
LweI GCATC 1 cut(s) 828
MaeI CTAG 2 cut(s) 240, 248
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 101, 392
MalI GATC 2 cut(s) 174, 512
MbiI CCGCTC 1 cut(s) 26
MboI GATC 2 cut(s) 172, 510
MboII GAAGA 2 cut(s) 167, 173
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 5 cut(s) 32, 478, 536, 636, 864
MlyI GAGTC 2 cut(s) 770, 815
MnlI CCTC 9 cut(s) 70, 151, 183, 249, 271, 365, 417, 493, 690
Mph1103I ATGCAT 1 cut(s) 665
MseI TTAA 2 cut(s) 633, 815
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 6 cut(s) 17, 54, 346, 372, 434, 784
MspR9I CCNGG 1 cut(s) 784
MwoI GCNNNNNNNGC 6 cut(s) 120, 351, 381, 688, 796, 847
NciI CCSGG 1 cut(s) 784
NcoI CCATGG 1 cut(s) 692
NdeII GATC 2 cut(s) 172, 510
NlaIII CATG 7 cut(s) 61, 190, 667, 688, 696, 715, 859
NlaIV GGNNCC 2 cut(s) 71, 690
NmuCI GTSAC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 399
PaeR7I CTCGAG 2 cut(s) 27, 549
PkrI GCNGC 7 cut(s) 43, 110, 113, 125, 353, 652, 789
PleI GAGTC 2 cut(s) 770, 814
PpsI GAGTC 2 cut(s) 770, 814
PspN4I GGNNCC 2 cut(s) 71, 690
PspPI GGNCC 1 cut(s) 689
PspXI VCTCGAGB 1 cut(s) 549
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 633, 815
SatI GCNGC 7 cut(s) 42, 109, 112, 124, 352, 651, 788
Sau3AI GATC 2 cut(s) 172, 510
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 2 cut(s) 770, 815
ScrFI CCNGG 1 cut(s) 784
SduI GDGCHC 1 cut(s) 456
SetI ASST 8 cut(s) 169, 194, 226, 230, 353, 504, 522, 760
SfaNI GCATC 1 cut(s) 828
Sfr274I CTCGAG 2 cut(s) 27, 549
SlaI CTCGAG 2 cut(s) 27, 549
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 4 cut(s) 27, 74, 358, 549
SmoI CTYRAG 4 cut(s) 27, 74, 358, 549
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 5 cut(s) 32, 478, 536, 636, 864
SsiI CCGC 8 cut(s) 24, 41, 281, 298, 321, 335, 339, 780
SspMI CTAG 2 cut(s) 240, 248
StyD4I CCNGG 1 cut(s) 782
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 230
TaqI TCGA 3 cut(s) 28, 540, 550
TaqII GACCGA 1 cut(s) 808
TasI AATT 5 cut(s) 32, 478, 536, 636, 864
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 633, 815
Tru9I TTAA 2 cut(s) 633, 815
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 6 cut(s) 108, 111, 123, 351, 650, 787
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 150, 168, 680
TspRI CASTG 1 cut(s) 406
XagI CCTNNNNNAGG 1 cut(s) 491
XapI RAATTY 2 cut(s) 536, 636
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 715
XhoI CTCGAG 2 cut(s) 27, 549
XspI CTAG 2 cut(s) 240, 248
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.